RNA id: XR_002470550.2



Basic Information


Item Value
RNA id XR_002470550.2
length 1137
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110504048
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23855143 ~ 23888178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cgactttccgaagcggatcctctgttttgcccaccacccaggacaatggatcggatcccagccggcgaaccaaaacaacgacgccgtaaaaggggcagacaAAGCGGTCTTCTAGTCAGGCTCCAgggacgggcacatcgcgcaccacccccaagcatactactcgccaatgtccagtctcttgacaacaaggttgatgaaatacGAGCAAGGGCAGCATTCCAGAAAGACATAAagtGCGAGCTGATCAAGGGGTCGGAAATGTGgatattgccagatgttcactgtTCGAGGAACAGGCCGTAGAAGCCTTATTGTtggcaaaagtgtccataaccagagATTCAGCAGGTGGAGGACCTGCTTTATCAGGAGGATAATCTGGAAATACTGACAATGGGCTCATTGTTCCTGACATCCCATGCCCCGTCTACTGAGAATCTTGCTGTGCTCCAACATCAAGTGAACCCTACCAACGACTCATCTTTTGGTCAGGACATATACATGCATGCTCTTCGATTAGTATTGAGTCTCCAACCTATTTAGGTGCAGTCCTCCCACACTATATAGGATATTGTTTTAGCCCCAGTGCCACTCTTGATAATGgcaaacatttgtattttttggAGGAGGGTGAAAGGATAGCAGGCCCAGCTGTCAAAGTGAGAGGGGAGGCTATTCTGGATAGAGCAGGTACTTGTGTGTAGTCTATTTCTTGTGAGcttttctgtcctcagatacagAAAGCTGTGAAAGCCTGTCTGCAGATTAAGAGGTCCCAATGAAGAGCAGCAGTTTTCAGTCTTGGTGCTGGGGACTCAAAACGTTTGTTTGTGCCttggcactacacagctgattcaaatgatcaagtcatcatcaagcttcaaatggtatgttttgatgtgagagagaaagacccGAGGAAATCCCCTCAGCGCCGCCTCACCCGCTCTTAAAATAATCTTCGGGCCGACTGGGAGTCCAAGGCTGGTTAGAAGACACCGCTAGAGACactatgtaattgtgatgaactgagagaatattagggtggcactaattcattaatcatatgctgtcttccctgctcctctgttttacctctctccccacctctttcttcctcttttttGTATTTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2190887 lncRNA upstream 38329 23814639 ~ 23816814 (+) True G1915868
TU2190850 lncRNA upstream 102484 23752326 ~ 23752659 (+) True G1915835
TU2190848 lncRNA upstream 105920 23748926 ~ 23749223 (+) True G1915833
TU2190841 lncRNA upstream 110531 23744402 ~ 23744612 (+) True G1915826
TU2190793 lncRNA upstream 139748 23715164 ~ 23715395 (+) True G1915778
TU2191027 lncRNA downstream 23303 23911481 ~ 23911684 (+) True G1915999
TU2191036 lncRNA downstream 29510 23917688 ~ 23917908 (+) True G1916008
TU2191053 lncRNA downstream 39122 23927300 ~ 23927701 (+) True G1916025
TU2191072 lncRNA downstream 48574 23936752 ~ 23937101 (+) True G1916043
TU2191074 lncRNA downstream 50290 23938468 ~ 23938701 (+) True G1916045
LOC110503376 mRNA upstream 59145 23792880 ~ 23795998 (+) True LOC110503376
XM_036961089.1 mRNA upstream 88925 23752934 ~ 23766218 (+) True LOC110503375
XR_005039436.1 mRNA upstream 353466 23487167 ~ 23501677 (+) True LOC118944115
LOC110503371 mRNA upstream 459549 23388846 ~ 23395594 (+) True LOC110503371
XM_021582842.2 mRNA upstream 525078 23314403 ~ 23330065 (+) False LOC110504039
LOC118944003 mRNA downstream 48139 23936317 ~ 23952562 (+) True LOC118944003
XM_021582866.2 mRNA downstream 765796 24653974 ~ 24670701 (+) True pipox
LOC110503380 mRNA downstream 1220922 25109100 ~ 25111331 (+) False LOC110503380
XM_036962074.1 mRNA downstream 1232560 25120738 ~ 25239451 (+) False LOC110504061
XM_036962075.1 mRNA downstream 1232560 25120738 ~ 25239451 (+) False LOC110504061
TU2190341 other upstream 429071 23425189 ~ 23426072 (+) True G1915361
TU2187949 other upstream 1660536 22193790 ~ 22194607 (+) True G1913153
TU2187558 other upstream 2193445 21660162 ~ 21661698 (+) False sacs
TU2187319 other upstream 2652694 21201136 ~ 21202449 (+) True G1912565
TU2186058 other upstream 3547751 20304763 ~ 20307392 (+) True G1911474
TU2191158 other downstream 124087 24012265 ~ 24012808 (+) True G1916129
TU2191642 other downstream 630182 24518360 ~ 24519017 (+) True G1916588
TU2191732 other downstream 753520 24641698 ~ 24642134 (+) True G1916660
TU2191909 other downstream 1036956 24925134 ~ 24927054 (+) True G1916811
TU2192259 other downstream 1498141 25386319 ~ 25387517 (+) True G1917109

Expression Profile