RNA id: TCONS_00053343


Basic Information

Item Value
RNA id TCONS_00053343
length 676
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_027057
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5531583 ~ 5533803 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCTAATTTGACTAGACAACATCATGCAGAGAGCTGTTGTATTTCTGCTGCTGACCGCTCTCTTGGCCAATGGACAAGAGTTACGCTGGGAAAACTCCTATGATCAGCCCCTGAATTTTCAGTGTCCTCCAGGACAGTCCATATCCTATGTGAAGAGCCAACATGAGAATAAGTATGAAGACCGGGTGTGGGAGTTTGGCTGTAAAGACACCTTTAGCTCTGGTTCAGACTGTTTTCTGTCTCCGTACGTCAATGACTTCGACCAACAGTTCACCTATGAGTGTCCACCAAATCACATCATGTCAGGAATGAGCAGCTACCACAGTGATAAACACGAGGACAGAAGGTGGCAGTTCTATTGCTGTAGAGGTAACCGCGTCTGTACTGGTCAGTGTGAGTGGACCACTTATGTAAACTGGTTTGATGAGCTCTTTCACTGGACTGTCCCAAACCAACACTTCCTTACGGGTGTTGAAAGCTACCATGAGAATAAATACGAagaCCGTCGCTGGAAGTATCAGTACTGTGCCAAGTTGCAATGCTGAGACTCTCTCAAATGCAAATACAATCAAATTCAAACCTGAAATGAATACAAGACTAAACACAATGTCAAACTGGTGACTATTAGTGAAAAAGAAATCTGTAACAACTTATCAATACATTTCAGTCACATAA

Function

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-124 Predicted to be involved in collagen fibril organization. Predicted to be located in extracellular region.

Ensembl:

ensembl_id ENSDART00000042080

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053341 lncRNA upstream 1230 5528694 ~ 5530359 (+) True XLOC_027056
TCONS_00053339 lncRNA upstream 12170 5515031 ~ 5519419 (+) True XLOC_027055
TCONS_00053335 lncRNA upstream 18198 5506946 ~ 5513391 (+) False XLOC_027055
TCONS_00057595 lncRNA upstream 75531 5452055 ~ 5456058 (+) True XLOC_027052
TCONS_00057594 lncRNA upstream 77033 5451843 ~ 5454556 (+) False XLOC_027052
TCONS_00053345 lncRNA downstream 4134 5537937 ~ 5539842 (+) True XLOC_027058
TCONS_00053347 lncRNA downstream 108911 5642714 ~ 5644808 (+) True XLOC_027059
TCONS_00053353 lncRNA downstream 291565 5825368 ~ 5826340 (+) True XLOC_027063
TCONS_00057127 lncRNA downstream 423600 5957403 ~ 5963871 (+) True XLOC_027069
TCONS_00053364 lncRNA downstream 882475 6416278 ~ 6508633 (+) False XLOC_027071
TCONS_00053340 mRNA upstream 1148 5523690 ~ 5530441 (+) False XLOC_027056
TCONS_00053337 mRNA upstream 9152 5506952 ~ 5522437 (+) False XLOC_027055
TCONS_00053338 mRNA upstream 10089 5507058 ~ 5521500 (+) False XLOC_027055
TCONS_00053329 mRNA upstream 37291 5392094 ~ 5494298 (+) False XLOC_027051
TCONS_00053328 mRNA upstream 144111 5378338 ~ 5387478 (+) True XLOC_027050
TCONS_00053344 mRNA downstream 3298 5537101 ~ 5539842 (+) False XLOC_027058
TCONS_00053346 mRNA downstream 108893 5642696 ~ 5645166 (+) False XLOC_027059
TCONS_00053348 mRNA downstream 207930 5741733 ~ 5744457 (+) True XLOC_027060
TCONS_00053349 mRNA downstream 242544 5776347 ~ 5784895 (+) False XLOC_027061
TCONS_00053351 mRNA downstream 262958 5796761 ~ 5806144 (+) False XLOC_027062
TCONS_00053336 other upstream 15727 5506952 ~ 5515862 (+) False XLOC_027055
TCONS_00053334 other upstream 37291 5488281 ~ 5494298 (+) True XLOC_027051
TCONS_00053333 other upstream 53241 5465998 ~ 5478348 (+) False XLOC_027051
TCONS_00053330 other upstream 114602 5403115 ~ 5416987 (+) False XLOC_027051
TCONS_00053314 other upstream 257751 5255078 ~ 5273838 (+) True XLOC_027045
TCONS_00053350 other downstream 244426 5778229 ~ 5784871 (+) True XLOC_027061
TCONS_00053381 other downstream 1380913 6914716 ~ 6914851 (+) True XLOC_027079
TCONS_00053382 other downstream 1491364 7025167 ~ 7025283 (+) True XLOC_027081
TCONS_00053383 other downstream 1629955 7163758 ~ 7163874 (+) True XLOC_027083
TCONS_00053390 other downstream 1881534 7415337 ~ 7415437 (+) True XLOC_027085

Expression Profile

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