RNA id: TCONS_00053345


Basic Information

Item Value
RNA id TCONS_00053345
length 591
lncRNA type retained_intron
GC content 0.45
exon number 3
gene id XLOC_027058
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5537101 ~ 5539842 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcttactagctaTACTACAAACTTCCagtcaggtgtgttgaagcaagttggagctaagatcagcaggacaccggccctccaggactgactttggacTCCCCTGAATTAATCCTCACTGTATTCTTTCATCCTAATAAACCAAAGCCAACATCACAATCATCATGAGGACCGGATGTGGGAGTTTGGCTGTAAAGACACCTTTAGCTCTGGTGCAGACTGTTTTCTGTCACCGTATGTCAATGACTTCGACCAAGCGTTCACCTATGAGTGTCCAGCACACCACTTCATGTCAGGAATGAGCAGCTACCACAACAACAAACATGAGGACAGACGGTGGCAGTTTTACTGCTGTAGAGGTATTGGCCAATGTATTGCTGAATGTGAGTGGACGACTTATGTAAACTGGTTTGATGAATACTTTCACTGGACTGTGCCCAACCAAAACTACCTGGCGGGTGCTGAAAGCTACCACGAGAATAAACATGAAGACCGCCGCTGGAGGTACAAGTATTGTACGAAAGTGCAATGCTGAGACTCTCGCAAATtccctcaaattcaaatacaataaatctgagTTGCACATCTGAATAA

Function

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-143 Predicted to be involved in collagen fibril organization. Predicted to be located in extracellular region.

Ensembl:

ensembl_id ENSDART00000132837

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053341 lncRNA upstream 7578 5528694 ~ 5530359 (+) True XLOC_027056
TCONS_00053339 lncRNA upstream 18518 5515031 ~ 5519419 (+) True XLOC_027055
TCONS_00053335 lncRNA upstream 24546 5506946 ~ 5513391 (+) False XLOC_027055
TCONS_00057595 lncRNA upstream 81879 5452055 ~ 5456058 (+) True XLOC_027052
TCONS_00057594 lncRNA upstream 83381 5451843 ~ 5454556 (+) False XLOC_027052
TCONS_00053347 lncRNA downstream 102872 5642714 ~ 5644808 (+) True XLOC_027059
TCONS_00053353 lncRNA downstream 285526 5825368 ~ 5826340 (+) True XLOC_027063
TCONS_00057127 lncRNA downstream 417561 5957403 ~ 5963871 (+) True XLOC_027069
TCONS_00053364 lncRNA downstream 876436 6416278 ~ 6508633 (+) False XLOC_027071
TCONS_00053365 lncRNA downstream 965791 6505633 ~ 6508633 (+) False XLOC_027071
TCONS_00053343 mRNA upstream 4134 5531589 ~ 5533803 (+) True XLOC_027057
TCONS_00053342 mRNA upstream 4181 5531583 ~ 5533756 (+) False XLOC_027057
TCONS_00053340 mRNA upstream 7496 5523690 ~ 5530441 (+) False XLOC_027056
TCONS_00053337 mRNA upstream 15500 5506952 ~ 5522437 (+) False XLOC_027055
TCONS_00053338 mRNA upstream 16437 5507058 ~ 5521500 (+) False XLOC_027055
TCONS_00053346 mRNA downstream 102854 5642696 ~ 5645166 (+) False XLOC_027059
TCONS_00053348 mRNA downstream 201891 5741733 ~ 5744457 (+) True XLOC_027060
TCONS_00053349 mRNA downstream 236505 5776347 ~ 5784895 (+) False XLOC_027061
TCONS_00053351 mRNA downstream 256919 5796761 ~ 5806144 (+) False XLOC_027062
TCONS_00053352 mRNA downstream 258381 5798223 ~ 5807645 (+) True XLOC_027062
TCONS_00053336 other upstream 22075 5506952 ~ 5515862 (+) False XLOC_027055
TCONS_00053334 other upstream 43639 5488281 ~ 5494298 (+) True XLOC_027051
TCONS_00053333 other upstream 59589 5465998 ~ 5478348 (+) False XLOC_027051
TCONS_00053330 other upstream 120950 5403115 ~ 5416987 (+) False XLOC_027051
TCONS_00053314 other upstream 264099 5255078 ~ 5273838 (+) True XLOC_027045
TCONS_00053350 other downstream 238387 5778229 ~ 5784871 (+) True XLOC_027061
TCONS_00053381 other downstream 1374874 6914716 ~ 6914851 (+) True XLOC_027079
TCONS_00053382 other downstream 1485325 7025167 ~ 7025283 (+) True XLOC_027081
TCONS_00053383 other downstream 1623916 7163758 ~ 7163874 (+) True XLOC_027083
TCONS_00053390 other downstream 1875495 7415337 ~ 7415437 (+) True XLOC_027085

Expression Profile

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