RNA id: TCONS_00005010


Basic Information

Item Value
RNA id TCONS_00005010
length 835
lncRNA type retained_intron
GC content 0.41
exon number 12
gene id XLOC_002694
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17731293 ~ 17745374 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCACACTGACTTTAAGCCTTAAGCACTTGTTTAAACTTGTTCGGCATCCACCTCTGTCATACAAGATGAGAACGGGTCTTCCCATTATCCTCTTTGTTGCAGTGGCAGGTTTCCACAATGTGATTTCAGTGTCTCTGGAATCTGACGAAAGTAATGAATCATCCGAAGAGAGAGAGTATGCAGAGAACAGCACACCACAGACCACAGGTATAACATAATCGGTCATATAATATTTCCACAGATGAGTCGCAGTATGCAGCTGCACACGTGAAAGACGATCTCATAAAAACGACTCTTATGGGTATCCCAGCAGATGGTGAAACAAAGGCAGTATCAAATGATACAgATGAGTATGCAGCTGCTCACGTGAAAGGTAAATATGAAGCGAATAAAACTATTTGTGAACTCAAACTGAAGTGTTTGAtgccatttactcacacttgatGTTACTAGCAATTATACTCCATGAATAACTCCAACAGATGGTGAAACAGAAGCAGGATCAGAAAATACAGAGGACAGAAATGATGAAGACTCAAAAGAGTCAAAGGTGCTTGAGAAGGAAGATGATGATGGTGAGACTGGAGCACTAACAAACAATACAGAAGCGAACACAGGAAGTGACGATGATGTTGAAGCAGACGCTGAGAAAGACAATGACAACTCTGATGATACTAGCATTTATTAATAGAAGAGTGTCTGTGTGGAGTCTGTAATATCTTTAAACCTAAATGCCTTGTTTTATGAAGCATGTTTCTAACCCATACACCACCTCGGCAAAACCTCTGTGTATCATGTACCTTTCACACAAAGCCACTTTCTCTTGAAGACTG

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0019432 triglyceride biosynthetic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004180 carboxypeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004568 chitinase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008235 metalloexopeptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008238 exopeptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0008061 chitin binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-091204-393 No description available

Ensembl:

ensembl_id ENSDART00000143198

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006027 lncRNA downstream 143546 17582092 ~ 17587901 (-) True XLOC_002691
TCONS_00006026 lncRNA downstream 220248 17509980 ~ 17511199 (-) False XLOC_002688
TCONS_00004994 lncRNA downstream 268030 17460789 ~ 17463417 (-) False XLOC_002686
TCONS_00006025 lncRNA downstream 289026 17437490 ~ 17442421 (-) False XLOC_002685
TCONS_00006028 lncRNA upstream 154969 17900311 ~ 17911539 (-) True XLOC_002695
TCONS_00005014 lncRNA upstream 242792 17988134 ~ 17988749 (-) True XLOC_002696
TCONS_00006029 lncRNA upstream 528672 18274014 ~ 18282956 (-) True XLOC_002697
TCONS_00006030 lncRNA upstream 539072 18284414 ~ 18286943 (-) True XLOC_002698
TCONS_00006031 lncRNA upstream 1343654 19088996 ~ 19092606 (-) True XLOC_002701
TCONS_00005005 mRNA downstream 20810 17700016 ~ 17710637 (-) True XLOC_002693
TCONS_00005002 mRNA downstream 143615 17552733 ~ 17587832 (-) False XLOC_002691
TCONS_00005001 mRNA downstream 180516 17543680 ~ 17550931 (-) True XLOC_002690
TCONS_00005000 mRNA downstream 181208 17543276 ~ 17550239 (-) False XLOC_002690
TCONS_00004996 mRNA downstream 229919 17485945 ~ 17501528 (-) False XLOC_002687
TCONS_00005012 mRNA upstream 241946 17987288 ~ 17988779 (-) False XLOC_002696
TCONS_00005013 mRNA upstream 242093 17987435 ~ 17988779 (-) False XLOC_002696
TCONS_00005015 mRNA upstream 546629 18291971 ~ 18468385 (-) False XLOC_002699
TCONS_00005017 mRNA upstream 546629 18291971 ~ 18492617 (-) False XLOC_002699
TCONS_00005016 mRNA upstream 546629 18291971 ~ 18492617 (-) False XLOC_002699
TCONS_00005004 other downstream 104194 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005003 other downstream 161295 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00004999 other downstream 188425 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 212413 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004997 other downstream 230043 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00005042 other upstream 2738472 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005057 other upstream 2915075 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005060 other upstream 3163100 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005063 other upstream 3295315 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005070 other upstream 3798559 21543901 ~ 21544517 (-) True XLOC_002729

Expression Profile

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