RNA id: XM_036961645.1


Basic Information

Item Value
RNA id XM_036961645.1
length 6315
RNA type mRNA
GC content 0.54
exon number 34
gene id LOC110503264
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 36985873 ~ 37079320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCGTCGAAAACAGCAAAAACACATCGCTGCTAACGGATTGCGCAACGTCGCCCGTTCAACATGTATTTTCTCACATCGTAGTGACATGAGGGCGACATGGGTGCCAAGGAGTCAAGGATAGGTTTCCTTTCGTATGAAGAGGCCGTTAAAAGAGtgACTGATGTGGAGTTGAAGCGGCTGAAGGATGCCTTTAAGAGGACCAGCGGCCTGTCCTTCTACATGGCCCAACAGTGCTTCTACAGAGAAGTACTGGGAGATGGGATCCCTCCGAAGGTTGCAGAGGTGATCTACAACTCGTTTGGAGGTACCTTTAAAGGACTGCACTTCAACAACCTCATCATTGGCCTGGTGCTGCTGACCAGAGGACGAGATGGGGAGAAGGCCAAGTACCTCTTCAGCCTGTTTGCCAGTGAGTCGGGTGGCTATGCGGCGCGGGATGACATGGAGGCCGTGCTACGGGCGGTGGACGGGGAAGTCCCGCCCTCTCTCAGGAAGTGCTTCAGCGAGGGGGAGAAAGTCAACTATGAGCGCTTTAAGAGCTGGCTCCTTCAGAACACGGAGGCGTTCACCTTCTCCCGTTGGCTGCTCTCCGGAGGCGTGTGTGTCACCCTCACAGACGACAGCGACACGCCCACCTTCTACCAGACTCTGGCCGGAGTCACACACTTAGAAGAGTCTGATATCATTGACTTGGAGAAGCGCTATTGGCTGCTGAAAGCCCAGTCCAGGACCGGACGCTTTGACTTGGAGACCTTTGTCCCGCTGGTCTCTCCTCCTATTCGCGCTTCGCTAAGTGAAGGTTTGTTTCATGCCTTTGATGAGAACCGGGACAATCACATCGACTTTAAGGAGATCTCCTGTGGCCTGTCTGCCTGTTGCCGGGGGCCCGTCGCCGAGAGGCAGAAATTTTGTTTCAAAGTGTTTGATGTGGACCGGGACGGGGTTCTGTCTCGAGACGAAATCCATGAAATGGTGGTCGCACTCCTGGAGGTGTGGAAAGAcaatcgcacacacacactccctGAGCTGCTCACCAACGTGTCGGACATAGTGGAGGGAATCCTGAAGATGCACGACACGACAAAGCTGGGTCACCTGACCCTAGAGGACTACCAAATATGGAGTGTGAAGAGCGCTTTGGCCAACGAGTTCCTCAACCTGCTGTTCCAgGTGTCCCACATTGTCCTGGGCCTTCGGCCTGCTACTCCTGAAGAGGAGGGACAAATCATCAGggggTGGCTGGACAGAGAGGCCAGACGTGGGCTTCAGCCTGGTGAGAACAGGTTCCTCATCTCCAGCCAGTGGTGGACGCTCTGGAAGGACCATGTCAGATATgacCACAAGTCCATCCTGATGGATcagccctctgtcctctcctctctgaggaATCCTCAGGCCTCTGCCACCGTCGAGCCTGCCCCCCTGGAGCCAGGGGTAGGTGAAGGTCTGGGGGtccccagcccagccagccccACAGAGGAGAGGTCTCCTGATGCTGTGTTCAGCGTCTCTGAAGCCACAGAGACACAAAGCACAGtgGTGACCCCCCAGGCCGGCCCCTCAGCCACAGAGACCTCTTTTGCCCGGCAACACCACGTGTCAGACAACAACCAGTGTTTCTCGGGGGACAACGGccacatcccctccctctctcagtccCATCTGGCAGCTCAGAGGCCTGGAGCCATCGACAACACGCCCCTGGTCAACACAGACCCCATGAAGGCCCCCTCATTGACCATGGAGGGAGGCCGGCTGAACCAATCCTTACAGCTGGTGGCGGGCAAGGACTTTGAGACGGTGCCAGAGCCGGTGTGGAGGGCGCTGTTCCACTGGTATGGAGCCAACCTCAGCCTGCCACGACCGGTGATCCAGCAGACGAAAACAGGCCGTGCTGAGCTGGAGCTCTTCCCACGCTACCTCCTCTTCCTGCGGCAGCAGCCCGCCACACGCACCCCCCAGTCCAACATCTGGGTTAACATGGGTATGACCAGCCTGAGAATGTTCCCCCAGCATCTCCCCAGAGggAACGTGCCCTCCCCCAACGCTCCTCTGAAGCGTGTCCTGGCCTATACAGGCTGTTTCAGCCGCGTGGGCACCATCAAGGACATCCACCTGTACCTGTCTCGGAGGCTACGCATCAAAGACGAGGACATGAGGCTGTGGCTCTACAAcagcgagAACTATCTGACCCTGCTGGATGACGAGGACCACACTCTGGAGGGCCTGAAGATCCAGGACGAGCAGCACTTAGTTATCGAAGTTCGGAACAAAGACATGAGCTGGCCAGAAGAGATGTCCTTCATCGCTAACAGCAGTACAATGGACCGACATAAAGTTGCTACGGAGAAGGGTGCCACGGGCCTCAGTAACCTAGGCAACACGTGCTTTATGAACTCTAGTATCCAGTGTGTGAGCAACACCACGCCTCTGACTGACTACTTCATCTCAGGAAGACACCTCTATGAACTCAACAGAACCAACCCCATCGGGATGCGAGGTCACATGGCTAAATGCTACGGAGACCTGCTGATGGAGCTGTGGAGTGGAACACAGAGGAACGTTGCTCCTCTCAAACTCCGGTGGACGATAGCGAAGTACGCCCCGCGGTTCAACGGCTTCCAGCAGCAGGACAGTCAGGAGCTCCTGGCCTTCCTATTGGACGGGCTCCATGAGGACCTGAACAGGGTGCATGAGAAACCCTACGTAGAGCTGAAGGACAGCAACGGACGACCCGACTGGGAGGTCGCATCAGAGGCGTGGGAGAACCACTTGCTGAGGAACCGTTCCATCGTGGTGGATCTGTTCCACGGCCAGCTCAAGTCCCAGGTCAAGTGTAAGACGTGTGGTCACATCAGCGCCCGCTTCGACCCCTTCAACTTCCTGTCTTTACCCCTCCCCATGGACAGCTCCATGCACCTGGAGATCACTGtcattaTGCTGGATGGTTCTACCCCTGTACGGTTCGGCCTGAGGCTCAACATGGATGACAAGTACACCGGCCTGAAGAAACAGCTGAGTGAACTGTGTAGTCTGAAACCAGAACAGATACTACTGGCTGAGGTCCACACCTCCAACATCAAGAACTTCCCTCAGGATAACGAGAAGGTGCGTCTGTCGGGGAACGGCTTCCTGTGCGCGTTTGAGATCCCTGTCCCAGGCTCCcccacctccctcacctccctctcctctccaacacAGACAGACATCACCCCTGTGCCCGTGGCTAATGGGGTGGCGGTGACAGCGGAAGGGCATCCTGCCGGTAAGCCTGGTCTGATCCCCATCGGCATGCCCAGCGCTGTGGTGCCCTGCAGAGAGGCCACGCAGAGAGCCCTGGTCAACGGACACGTGCCCCCCGTCCAGGACAGCCCCTTCATTGGGTACATCATTGCCATGCACAGAAAGATGATCCGGACGGAGTtgtatttcctgtccagtcagaAGAACCGTGCCAGTCTGTTTGGGATGCCTCTGATCGTTCCCTGTACGGTTCACACCAGTCAGAAGGACCTGTACGATGCTGTCTGGATACAGGTGGCCCGTCTGGCCAGCCCTCTGCCCCCGCAGGAGGCCAGCAACCATGCACAGGACTgTGATGACAGTATGGGCTACCAGTACCCCTTCACACTGAGAGTGGTGGGGAAGGATGGCAGCTCGTGTGCCTGGTGTCCCTGGTACAGGTTCTGTCGAGGCTGTGCGGTGGACTGTACGGAGGACAGGGCCTCGGTAGAAAACGCCTACATAGCTGTCGACTGGGATCCTACGGCCCTACACCTCCGTTACCAGACCTCACAGGAGAGGatagtAGAGGAGCACTGTAGTGTGCAGCAGAGTCGCAGGGCCCAGGCTGAGCCCGTCAGTCTAGACAGTTGTCTGAAGGCCTTCACCAGTGAGGAGGAGCTGGGAGAGGATGAGCTCTACTACTGCTCCAAGTGCAAGACCCACCGCCTGGCCACTAAGAAACTGGACCTGTGGAGACTGCCGCCTATACTGATAGTACACCTGAAGAGGTTCCAGTTTGTGAACGGCCGCTGGATCAAGTCTCAGAAGATCGTCCAGTTTCCCAGAGAGAGTTTTGACCCTAGTGTTTACCTGGCTCCCCGGGAGGCGGGGCTTAACGGGCTACACGGTCTGCAGAGCCGCAGCGAGGGGGAGGAGCTACTAAGGATAAGAGGAGAAGAAACGGTATCCTCCATCTCCGCCCCTGCTGGGTTCCTCAACATCCTCAAAGCCTCTCCAGCGTCAGGCAGGAAGTCAGCCCCTCCCTCCTTCATCAGCCGTACCAGCAGCCCCTGCAGCAGCCCTAAGACAGGAGGAGGCAGTCCAGGGGGCACGGGCCACAGACAGACCCGCCTCAGGCTCCCTCAGCTGGCCAGCCGGCACCGCCTCTCCAACAGCAAGGAGAACCTGGAGGGTAGTACCAGGGAGAGGGGAAGCGGCCCTGACACAGAGCCCAGGAAGGGAGCACCGCAGGCGGACACGGAGGGTGGGCTCGTGGGGGTGATGAGTGGAGGTTTTGGGGAGGTCGGGGTGAGGAGCGGGCCAGAGATGTCCACCACAGATGCGTCCAGCTGCCTCAGTAATGTCATCGTGATGAACGGGGACAGCGGTGGCCATTGCAACGAGGTACTAAGCGCGGAGGCCAGTACGGAGCCCAGCACGGACCTAGAGACCACTGCAACAGCCCAGCTGCACCAAAGAGACAACAGCCTGGAGAACATCTACAACTTATATGCAATTTCAtgccATTCAGGTATCATGGGAGGAGGACACTATGTGACCTATGCCAAAAACCCCAACAACAAATGGTACTGTTACAACGACAGCAGCTGTaagGAAGTGCACTCGGAGGAGATGGACACGGACTCTGCCTACATCCTGTTCTATGAGCAGAAGGGAGTGGACTTCTCTCAGTTCCTGCCAAAGACTGACGGCAAGAAGATGGCCGACACCACTAGCATGGACGAGGACTTTGAGTCTGACTACAAGAAGTACTGTGTCCTGCAGTGATTTCATGATCACACCGTCTTCCACCAACCTACCGGTCAACCCTCAAGGACACAATGCTTCTTCAGCCGGTCTCAACTGGGCTCCCAGGAAGCACAAAATGGTGTCTTTTGGCCGAGTCATCACAAACTGAACCACTTGGATGCCGGAGCAATTGTCATGTTTTCGGATACCGCAAGATACCCCCCGTGTTGTTTTGTCAAGAGAACAACATTGAagacccatttttttttttaaagcactaAGCTGTTGCACATTGAGCCTGAGGaaaccctccctctcctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatattgtcAACGCATGAGCTGATATTGCTTCCTTGTTGCGCATATTTGTCCCCTGCAGCCATCAAAACATGTCCACATACCTACATAATGTCTGTCTCTATAACTCACTATAGTGAAACGGTAGAGATTAATTATACTAATATTATTTAATCgataaaaagtttttttttattttccttcTTCAGTAACGATactgtttattattttttttaaacaactccTAATGCTACCTCACTGCATTTCATTGGCCAATTGGGAACGGTCAAATATTTTTGACAGTATTAAAACCTCACCCACTTCCTCCTTTTGATGtccgcgcacgcacacacacacacacacacacacacacacacacacacacacacacactttgaaaaaataataatctccCTTTATGAAGAAAGATTCCACCAAATTGAGGGGTTTGACCTTAATTTGACCCCTTGCCAAGCAACTTCCTATAACAAAAAAAGTGCAATTGCTGATCAGCGTACCCACGACATCGAATGACTTTAGGGGCGTTCACTGTAGTCATTTTAACTCGCAAGCTTGAGTTTAAATCTAGGTTATGTTGTGGACAGGTGCCATAGAGGATGTTTcaaaaataatatataaatatgtatatttgtattgttttctctttctccaaatacttattttataGAGTTATTTTTATCATTGCAATTATTTGTATGTATGTACATTTTTTTGTTAATTTAAGAGTTGTTCTCATCTCTGGTGTTTGTCTACAGTACGTTGTAGGGAGCCACTCTTGAGATTGTAAATGAATAGGGCcacatgacaccctattccctagtgcactacttttgaccagggcccatagggttctggtcagaaatagtgcactactgaACGGGtaccttcacaaagtattcataccccttgacttattccacatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2205471 lncRNA upstream 61098 36923383 ~ 36924775 (+) True G1928545
TU2205408 lncRNA upstream 128636 36839759 ~ 36857237 (+) True G1928498
TU2205369 lncRNA upstream 226061 36757257 ~ 36759812 (+) False G1928461
TU2205331 lncRNA upstream 233207 36752057 ~ 36752666 (+) True G1928436
TU2205366 lncRNA upstream 243489 36741820 ~ 36742384 (+) True G1928458
TU2205553 lncRNA downstream 44664 37123984 ~ 37124641 (+) True G1928618
TU2205560 lncRNA downstream 50355 37129675 ~ 37132501 (+) True G1928623
TU2205561 lncRNA downstream 50877 37130197 ~ 37131172 (+) True G1928624
TU2205570 lncRNA downstream 73640 37152960 ~ 37153239 (+) True G1928633
TU2205575 lncRNA downstream 95335 37174655 ~ 37175182 (+) True G1928637
XM_021581639.2 mRNA upstream 25411 36942895 ~ 36960462 (+) True LOC110503268
XM_036961113.1 mRNA upstream 52383 36927911 ~ 36933490 (+) False LOC110503269
XM_036961112.1 mRNA upstream 52383 36927913 ~ 36933490 (+) False LOC110503269
XM_036961114.1 mRNA upstream 52383 36927919 ~ 36933490 (+) True LOC110503269
XM_036961184.1 mRNA upstream 236244 36674490 ~ 36749629 (+) True LOC110503266
XM_036961475.1 mRNA downstream 46375 37125695 ~ 37186540 (+) False urb1
XM_036961473.1 mRNA downstream 46375 37125695 ~ 37191160 (+) False urb1
XM_036961474.1 mRNA downstream 46375 37125695 ~ 37191160 (+) False urb1
XR_005039341.1 mRNA downstream 59318 37138638 ~ 37139270 (+) True LOC118944028
XM_036961317.1 mRNA downstream 114316 37193636 ~ 37218070 (+) False LOC110503265
TU2205324 other upstream 323376 36661874 ~ 36662497 (+) True G1928430
TU2204948 other upstream 815402 36141229 ~ 36170471 (+) False G1928169
TU2205555 other downstream 94286 37173606 ~ 37183522 (+) True urb1
TU2205476 other downstream 122539 37201859 ~ 37203186 (+) True LOC110503265
TU2205616 other downstream 212342 37291662 ~ 37292416 (+) False LOC110503436
TU2205711 other downstream 355583 37434903 ~ 37435441 (+) True G1928752
TU2205719 other downstream 366547 37445867 ~ 37464638 (+) False G1928756

Expression Profile