RNA id: XM_036961475.1


Basic Information

Item Value
RNA id XM_036961475.1
length 6382
RNA type mRNA
GC content 0.55
exon number 36
gene id urb1
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 37125695 ~ 37191160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTGACAGAAGAACACATTTCTGTTTAGGTTCTCACATGTGTAGCCAGCAAGACCGGTGGCTAAAACTATTTGATCGCTTTTTCGGTTTACCTCTCAAACAAGATGGGGAAGAAACGGTCGAGTGAAGATGTGGATGAGTCCAAAACGCATGCGAAGAAAGGAAAAGTATCTGAGACAGCAGAGTTCAATGGGACTGTTTTTAAAGCCATGTTGAAGGAGCCGACCAAGGCAATGAAGGGCTTGGATACATTCATCACGACGGCAAAGAAGCTGCCATGTCCTGACCTGTATGACGTTGTTGAGGGTTACATCAAGATCTCCATGGAGTGTTCTGAGATCTTCaaactgctggagggagacaagCAGACGGAGAGTGAAATGATGTTGATTTTCCAGAGTTTGGAGATGATTCTGCTGCGTACAGCCAGCGATCTCTCTCATTTCAGCATGGTGGGATTCACTATAGTAAAGAAGGCTGTTTCCAGCTATATGAAACTCATACAGACATCCCTACACTCAGAAAACCACAGGTTTGTCCGTCACTGCCTAAGTTTCCTGTCAGCCATGGTATCCCAGGGAGCAGACACAGCCAGGGAAGTCTTCAGCCACTTCCACTTCACTAAAGGCCTGTCTGCTTTGGCCAAGAGGAAGGATAAGATGGGTAGACCTGATGTCCGCATGGCTTACACCCAGTTTGCCCTCTCCTTCCTTGTCTCTGGTGACAACGTTACTATTGGACAACTACTGGAGATGAAAGATTTCCTGCCAGACATTCTAAGCAGTGGACTGAAGGAGGATCGTATCTCCACTGTCAACCTGATTCTGTCTACTCTGCAGACTAAGGTGGTCCAGAGACAAGCCATCAGTAAAACCCAGAAGGTGCGTTTCTTCACCCCATCTCTCCTGGCCCAGATTGCATCTCTCTACAGGTGGAATGGCATTGTGGATGCAAGCACAGACGACGGCAAGATGGCAGAGAACGCAGAGGAAGCAGGGAAGATGGTCGTGAGGAAACTGGTTCACAACTTCCTCCTGAATCTATGCTGTTCCCGGAAACATGGCATCAGTTTCTACGACCCCAGCTTTGGAACGGCCGGCAGGGCTGGTAACATTGTGCTACTGCAGTTTGTGGTGGGGCTGAAGCAGGCTACAGAGGACGACCTGGTGTCTGATCTGATGGTCAATATACTAAGGGTCAGTCCTGACATCTTGCCCAGGTTCTTCAAGGAGACACAGTACTCCTTCATCCCTCGCCTCAAATCTGCCTGGACGGACAACATCACTCTGCTCAAGAAGATCTACGAGTCTCAGCCAGAGGTGTCCAAGGccttccagaccagagaggtTGTTCCTCTGCCCCGCCTCCTGTCCATGGTGCTGGTGACATCACTTCCTCCCGTCTGTAACAAGGCCTTCTTCACGCAGGGCATCAACTTTGCCAACGTGGTGGTGCAGCACACGACCCTGTCCCTCATGTCGTTCCTTCTGAAGAGAGCTCAGAGGAACATGGAGTTGTGTCTGGACCGCTCTGTGTGGCTCGCCTCTGATCTCTACACACCAGCCACCATGCAGGACTTCACACAGCAGTACAGGGAGGCACTCGGCAAGGTTCTACCGGACATGACGAGCATCGTGTCCAAATGGCAGTCACTGACCAagaaggagaaaggagggaaTGAAGGGAAGAAGGAAGGAGATGTCAAAGAGGACGCGACTAAAGTTGAACAGCCCGTCCCGTCAGGCCCCGAGTCTCCAGAGGTCATCGTCCTGAAAGCCCTCATCCTCCAGGTCATGTGTCTCTACCAGAAGGTAGTGCCTCATCTGGTTAGCCAGAGCAAGTTTGACTTCAGCAAGCTGCTCAAAGGTATCGTGTCAGAGAAAGGTATGAGAGAGGAGGTCCATCCAGTCCTTCAACACCAGATATTACAACTGGCCCTGGACCTGCCGGCCAGCAAGTTCTCCTGGTTCAGAGTTCAGGATCACGTGGAGACGAGCTCTGGGGAGAAGTCTGTGTTCTTCCTGCTCCTCAAGATGTTTgtgagcagcaacaacaacagccacctgAAAATGTCCACCAGGAAACTGGTGGTGAAGGTGCTGAAGGACAGTGGAGTGTTTGAGTACACCTGGTCTGAGCTGGAGCTGTGGCTGAAACACCTggacagactacagacagacCAGCAGGACACGGTCATACACTTCCTGGAGAGGGTGCTCATGTGTCTGGTGTGTAACCCCTACACCTACACAGACAAGGTGGCCAGTCTTGTCCAGGAGGCAGCCTACCTACAGGCCAATCTTAGCGGACAGGACGGAGACACCGCCAGCATCCCCATCTCACACATAGACGACGTGCTGGACATGGTTGACGTGATCATGGAGGGAAGCGAGGGGGAGACGGAGGAGCTGGGCCCGGCGCTTAGTGATGACCTCATCCTCCAGACCTTCCCTTTCAGTGCCGTGGTACCTGCTGTCCTGGAGGCCAGGAACAAACTACCTGCTACCTACAGAACGGAGAAAGGTGTAATATACGACTACATGGCAACAGTCCTGTGTGACGTGCTCCACTGTCAGAGAGACCCTCTGCCCCTCAGCCTGGCTCTTCTACAGTACGACAAAGAGCTGAACTCCTCTGAAGACCCTGGGCCCCCCCATCACTCCATCATTCACCTACATCACTACTACACAACATGGCTGCCCCAACAGGCCCGGGAACCTCTGTTCCAGTCCTGTGAAAGCCCTTTGCATGTCTCTCCTAGTCCTGTGACCTTCACTGGTCTACTGAAGACGGCCTACACCCAGGGGGCCTCTGCCCTGCTAGAAGACTCCTTCCGGCGGAGACTGGAGAAGAGTCTGGTCACTATGGAGACGGCAGAGTATCCTGTTGCAGCCAAGCAGATCCTGCTGTACATCAAAACCACTGTGGACAACTTCAGCATGTTGTCTATAGACACAGGGCTGCTGGAGCTCAATGTCCTAATGGGAGTTCTCCAGGGGCTGGTGTTGAGGCTTCAGAGCCCACAGGAACCAACTGAGGAAGAGCCCATGGTCGAAGGAGAGACTGAGCCCATGGTCGAAGGAGAGACTGAGCCCATGGTCGCTGATCAGAAGGCAGCGGAGACAGCAGAAACCATGGCTGTGGATCCCAAGGTGGCGGCGGAGACGGAACCTATAGCTATGGACCAGGACACAGCCACTGTAGTAGATCCAGCCAAGGCAGCAGAACCCAAAGCTGTGGACCTCCTGAATGGATCAGAGCTCTTCCTGGAGGTCAACCCGTCCTCTGAAGCAGAGGACGACCACAGCCTGgtggtgtTGTCAGTGCTGAGTTCCATCCTGAAGCACCCGTGTATCGAGCAGTGGTTCCTGTCTCTGGAGTTGTCCTCTGTCCCTCCTACCTCCCTCAACCCCGTCAGGCTGAAGCTGCTGTGTGCTCAACTGTCTGACTGCATCCTGGGTCTATTACAGTCCTCTGCCTCCGTCCTTCGACCCCTgaactccctccatctcctctccccctacctagAGGCTGTATCAAGGGCTCTGCTCAGAGAgctgggggagactggggagaggagggagaccgACAAGGAGTCCCGGCCTGTGAGAGCCTTCATGGCCTTGCATGCCTACATGGAACCCCCTCTTCTCCAGGAGCTtgtctcttcccttctcctcctccccaagGAGACCCTCATCACCCTGCGGGAGGGTgacggggagggagaggaggacagagagaagagcccCAGAGCAGCGGAGCTCAGTGTCTACGGACGCACGGCTCTACAGGTCCTCACtgagaccacctcctcctctgacGCCTCTTCATCCggctcccctgtcctcctcctctcccaggctcaCCTCCAAGGCCTGGCCACCCTGCTCCTCTCCTGCTCCAGCCCGTCTCTGGAGACCTTCCTCCTGCAGGCCCTGAGGACCCAGCCAGGCAACGCTAAACTCCTCCATACTGACATCCTGCTCCAGTGTCTCCGGGGGCCTCTCACTGCAGCCACCCAGGCCCTCGGGGTAGCTCTGCTGCAGAACTGCTCTGCTCACAGGCTCTGCTTCGAGGTGTGGTGCCTGAAGCCGCAGCACCTGGAGACACTGGCAGACCAGACGGAGACATTCCTACCGCTGGTCAACAGTTACCTGCGGACTGCAGCCAGAAAGGACCCCGCCAGGCCTAAAGAAGTTCAGACAGCGGTGCTGAAGGCCCTGAAGAAGGCCCTGTTCCCCAGGCTGAGCCTCTCTGTGCTGGGGCAGGAGACAGGGGAGGCCCTGGGGGCTGTGGAGGTTGTGGAGGCTCTGTCTAGTCTGGTTAGACTGACAGCTAAGGTCAAGGACATCAGAGAGCTCATCGCCTCCCTGCCTGCTGCCCTGCAGAAACTAGACGGCTTTGAGAGATGGCAGCTGGTGGACCCCATCAGtgctgtgctgtctgtctgtcccgaGGAGCTAGAGTTGTGGAGGACTTCGGTGCTCTCTGCTGCCCTCCGGTGGCTGAGCTCTTCCTACGGTCACAACAGAGACCAGAACACGGCACCACTCGCACAGGAGGACAGCATACTGAATAGACTGACTGAACTGCTGaCTTTTCCAGAAGACATCACAGCAGCAGAATGGAACAGCTTTGTCAAGGCTGGACTGAAGTGTCGCTACAGAGACCCTAACTTCCTGAGCACCCTAAACAGGATGTTGGATCTGATGTATGGAGGTAGTGAAGGACCTAAAGACCTGGTTCCTCTACCTACCATCCACATGATGGCCTCCAGCCACTCCCTGTTCCTACCCATCATGCTGGGAGACGAGGAGGACCTTAGTGGGAACACACAGGTTAAAGAggccctggtctctctcctgctcAGCCTAGTGAAGAGAAGTCCTGCTGTCTGTAGCAGCAGCCACTTCGTAGTCCTACTGGGAGGGTACGGCGCTACTCTCAGTACTACAGATCAGaatctgttactgctgctgcaggAGTACGAACGAAACGGCATCAGTCTGGTAGACTTTCAGTGCATGCTATGGGGCCCAGCGGCGGTGGAGCACCATAAGGCCCGGAGAAGCCTGGGCGTTTCCTTGTGGCAGCAACCCAGCTCTGAGGACCTGCTGGCTCTGCTCAGCCCTGACACCATGATCAACACCATCACTCACTTCCCCCTGCAACGCAGGATCatcctacagGAGGGTAAAGAGCTGATTTTCAAAGATGAGGAAGTGAAGGATCTTGGGAGTGTGTACGACCCTTGTTTCCTCCTGCCTCTCTTCAGCGCCATGCTTCAGCCAGAGTCTGTGATCGACTGTCTGAAGTTTGTGTCGAGTCACGGCCTTGGTGTGACGATGGTGTCCCTGAGTAGTTACGACCCCAAGCTGAGGGCAGCGGCCTATCAGGTCCTGGCTTCATACCACCATCATCTGGAGGCTGCTCGcttcagagagaagagacagctgctGTACCTGCTGGACATGGTAAAgaatgggatcagacagcagaaccTCAGGATGCCCTTCGTACTGACCACGTACATCACTAAGGTGGCCCGGCAGATGCTGAAACCAGAGGAGCACATGTACGTGGTGGTGAACCGGTTCCTGCTCTCCCATCAGTGTCTGGACTTCAGAAGGGTTCCAGAGTTCTTCAAACTGTTCTACAGCTGTGACATGGAGcacaAAATGGAGAGGGAGTGGATTCTGTCTGTCCTAGAGGAGGGCCTGAAAGACAGACAGTGTTATGATCTGCTGGACCAACAGGGGATCTTTCAGACACTGCTTGGATTCTGCTGCAGCCCACTCTGTGACCAGCACACTCAgACTCTGATAGTGAGAGTCCTGCACCAGGCTGGTCGTGTGACCAAAGCAGCCTACAACCTGACCAAGGGTCACGGGCTCCTCACCTGGATTCTGCAGCTGCTGGAGAAGAGacaTGTAGACCAGGGTCTGCTGAGTGCTGTGGTGGAGCTGCTCCATGTGCTGTGGTTCACCAACCTGGGCCAGAAGGAGACCCGTGGTGAGGGAgcctcctcttcatcatcctcttcctccacgGCCAAGGAGGACAAACCCCAGGGACACAGCACTCCAAAggttctccctctacccctcatcagCCAGTTCCTGTGTGTGGCCACCACCATCATCAGACATCTGAGacTGGTGAAGGCAGGTCAGCTGAGCCTGTATCTCCAGACTCTGAGCTCCATCCTGCAACATTGTGGAACAGCTCtgttacctctcctcctctcacaacccctcttctcttctccagacTGGTGAAGGCAGGTCAGCTGAGCCTGTATCTCCAGACTCTGAGCTCCATCCTGCAACATTGTGGAACAGCTCtgttacctctcctcctctcacaacccctcttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2205553 lncRNA upstream 1054 37123984 ~ 37124641 (+) True G1928618
TU2205520 lncRNA upstream 86986 37036568 ~ 37038709 (+) True G1928586
TU2205517 lncRNA upstream 105280 37016674 ~ 37020415 (+) True G1928584
TU2205512 lncRNA upstream 117988 37007046 ~ 37007707 (+) True G1928579
TU2205471 lncRNA upstream 200920 36923383 ~ 36924775 (+) True G1928545
TU2205582 lncRNA downstream 275 37186815 ~ 37187027 (+) True G1928644
TU2205583 lncRNA downstream 2011 37188551 ~ 37189282 (+) False G1928645
TU2205585 lncRNA downstream 2060 37188600 ~ 37189033 (+) False G1928645
TU2205584 lncRNA downstream 2166 37188706 ~ 37189073 (+) True G1928645
TU2205615 lncRNA downstream 105950 37292490 ~ 37293749 (+) True LOC110503436
XM_036961645.1 mRNA upstream 46375 36985873 ~ 37079320 (+) False LOC110503264
XM_036961646.1 mRNA upstream 46375 36985873 ~ 37079320 (+) False LOC110503264
XM_036961647.1 mRNA upstream 47709 36985873 ~ 37077986 (+) False LOC110503264
XM_021581639.2 mRNA upstream 165233 36942895 ~ 36960462 (+) True LOC110503268
XM_036961113.1 mRNA upstream 192205 36927911 ~ 36933490 (+) False LOC110503269
XM_036961317.1 mRNA downstream 7096 37193636 ~ 37218070 (+) False LOC110503265
XM_036961318.1 mRNA downstream 7096 37193636 ~ 37218070 (+) False LOC110503265
XM_036961319.1 mRNA downstream 7096 37193636 ~ 37239498 (+) False LOC110503265
XR_005039422.1 mRNA downstream 57937 37244477 ~ 37291414 (+) True LOC118944105
XM_036961693.1 mRNA downstream 105049 37291589 ~ 37375534 (+) False LOC110503436
TU2205478 other upstream 62151 37058006 ~ 37063544 (+) True LOC110503264
TU2205324 other upstream 463198 36661874 ~ 36662497 (+) True G1928430
TU2204948 other upstream 955224 36141229 ~ 36170471 (+) False G1928169
TU2205476 other downstream 15319 37201859 ~ 37203186 (+) True LOC110503265
TU2205616 other downstream 105122 37291662 ~ 37292416 (+) False LOC110503436
TU2205711 other downstream 248363 37434903 ~ 37435441 (+) True G1928752
TU2205719 other downstream 259327 37445867 ~ 37464638 (+) False G1928756
TU2205722 other downstream 266997 37453537 ~ 37464638 (+) True G1928756

Expression Profile