RNA id: XM_036961474.1


Basic Information

Item Value
RNA id XM_036961474.1
length 7724
RNA type mRNA
GC content 0.54
exon number 38
gene id urb1
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 37125695 ~ 37191160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTGACAGAAGAACACATTTCTGTTTAGGTTCTCACATGTGTAGCCAGCAAGACCGGTGGCTAAAACTATTTGATCGCTTTTTCGGTTTACCTCTCAAACAAGATGGGGAAGAAACGGTCGAGTGAAGATGTGGATGAGTCCAAAACGCATGCGAAGAAAGGAAAAGTATCTGAGACAGCAGAGTTCAATGGGACTGTTTTTAAAGCCATGTTGAAGGAGCCGACCAAGGCAATGAAGGGCTTGGATACATTCATCACGACGGCAAAGAAGCTGCCATGTCCTGACCTGTATGACGTTGTTGAGGGTTACATCAAGATCTCCATGGAGTGTTCTGAGATCTTCaaactgctggagggagacaagCAGACGGAGAGTGAAATGATGTTGATTTTCCAGAGTTTGGAGATGATTCTGCTGCGTACAGCCAGCGATCTCTCTCATTTCAGCATGGTGGGATTCACTATAGTAAAGAAGGCTGTTTCCAGCTATATGAAACTCATACAGACATCCCTACACTCAGAAAACCACAGGTTTGTCCGTCACTGCCTAAGTTTCCTGTCAGCCATGGTATCCCAGGGAGCAGACACAGCCAGGGAAGTCTTCAGCCACTTCCACTTCACTAAAGGCCTGTCTGCTTTGGCCAAGAGGAAGGATAAGATGGGTAGACCTGATGTCCGCATGGCTTACACCCAGTTTGCCCTCTCCTTCCTTGTCTCTGGTGACAACGTTACTATTGGACAACTACTGGAGATGAAAGATTTCCTGCCAGACATTCTAAGCAGTGGACTGAAGGAGGATCGTATCTCCACTGTCAACCTGATTCTGTCTACTCTGCAGACTAAGGTGGTCCAGAGACAAGCCATCAGTAAAACCCAGAAGGTGCGTTTCTTCACCCCATCTCTCCTGGCCCAGATTGCATCTCTCTACAGGTGGAATGGCATTGTGGATGCAAGCACAGACGACGGCAAGATGGCAGAGAACGCAGAGGAAGCAGGGAAGATGGTCGTGAGGAAACTGGTTCACAACTTCCTCCTGAATCTATGCTGTTCCCGGAAACATGGCATCAGTTTCTACGACCCCAGCTTTGGAACGGCCGGCAGGGCTGGTAACATTGTGCTACTGCAGTTTGTGGTGGGGCTGAAGCAGGCTACAGAGGACGACCTGGTGTCTGATCTGATGGTCAATATACTAAGGGTCAGTCCTGACATCTTGCCCAGGTTCTTCAAGGAGACACAGTACTCCTTCATCCCTCGCCTCAAATCTGCCTGGACGGACAACATCACTCTGCTCAAGAAGATCTACGAGTCTCAGCCAGAGGTGTCCAAGGccttccagaccagagaggtTGTTCCTCTGCCCCGCCTCCTGTCCATGGTGCTGGTGACATCACTTCCTCCCGTCTGTAACAAGGCCTTCTTCACGCAGGGCATCAACTTTGCCAACGTGGTGGTGCAGCACACGACCCTGTCCCTCATGTCGTTCCTTCTGAAGAGAGCTCAGAGGAACATGGAGTTGTGTCTGGACCGCTCTGTGTGGCTCGCCTCTGATCTCTACACACCAGCCACCATGCAGGACTTCACACAGCAGTACAGGGAGGCACTCGGCAAGGTTCTACCGGACATGACGAGCATCGTGTCCAAATGGCAGTCACTGACCAagaaggagaaaggagggaaTGAAGGGAAGAAGGAAGGAGATGTCAAAGAGGACGCGACTAAAGTTGAACAGCCCGGCCCCGAGTCTCCAGAGGTCATCGTCCTGAAAGCCCTCATCCTCCAGGTCATGTGTCTCTACCAGAAGGTAGTGCCTCATCTGGTTAGCCAGAGCAAGTTTGACTTCAGCAAGCTGCTCAAAGGTATCGTGTCAGAGAAAGGTATGAGAGAGGAGGTCCATCCAGTCCTTCAACACCAGATATTACAACTGGCCCTGGACCTGCCGGCCAGCAAGTTCTCCTGGTTCAGAGTTCAGGATCACGTGGAGACGAGCTCTGGGGAGAAGTCTGTGTTCTTCCTGCTCCTCAAGATGTTTgtgagcagcaacaacaacagccacctgAAAATGTCCACCAGGAAACTGGTGGTGAAGGTGCTGAAGGACAGTGGAGTGTTTGAGTACACCTGGTCTGAGCTGGAGCTGTGGCTGAAACACCTggacagactacagacagacCAGCAGGACACGGTCATACACTTCCTGGAGAGGGTGCTCATGTGTCTGGTGTGTAACCCCTACACCTACACAGACAAGGTGGCCAGTCTTGTCCAGGAGGCAGCCTACCTACAGGCCAATCTTAGCGGACAGGACGGAGACACCGCCAGCATCCCCATCTCACACATAGACGACGTGCTGGACATGGTTGACGTGATCATGGAGGGAAGCGAGGGGGAGACGGAGGAGCTGGGCCCGGCGCTTAGTGATGACCTCATCCTCCAGACCTTCCCTTTCAGTGCCGTGGTACCTGCTGTCCTGGAGGCCAGGAACAAACTACCTGCTACCTACAGAACGGAGAAAGGTGTAATATACGACTACATGGCAACAGTCCTGTGTGACGTGCTCCACTGTCAGAGAGACCCTCTGCCCCTCAGCCTGGCTCTTCTACAGTACGACAAAGAGCTGAACTCCTCTGAAGACCCTGGGCCCCCCCATCACTCCATCATTCACCTACATCACTACTACACAACATGGCTGCCCCAACAGGCCCGGGAACCTCTGTTCCAGTCCTGTGAAAGCCCTTTGCATGTCTCTCCTAGTCCTGTGACCTTCACTGGTCTACTGAAGACGGCCTACACCCAGGGGGCCTCTGCCCTGCTAGAAGACTCCTTCCGGCGGAGACTGGAGAAGAGTCTGGTCACTATGGAGACGGCAGAGTATCCTGTTGCAGCCAAGCAGATCCTGCTGTACATCAAAACCACTGTGGACAACTTCAGCATGTTGTCTATAGACACAGGGCTGCTGGAGCTCAATGTCCTAATGGGAGTTCTCCAGGGGCTGGTGTTGAGGCTTCAGAGCCCACAGGAACCAACTGAGGAAGAGCCCATGGTCGAAGGAGAGACTGAGCCCATGGTCGAAGGAGAGACTGAGCCCATGGTCGCTGATCAGAAGGCAGCGGAGACAGCAGAAACCATGGCTGTGGATCCCAAGGTGGCGGCGGAGACGGAACCTATAGCTATGGACCAGGACACAGCCACTGTAGTAGATCCAGCCAAGGCAGCAGAACCCAAAGCTGTGGACCTCCTGAATGGATCAGAGCTCTTCCTGGAGGTCAACCCGTCCTCTGAAGCAGAGGACGACCACAGCCTGgtggtgtTGTCAGTGCTGAGTTCCATCCTGAAGCACCCGTGTATCGAGCAGTGGTTCCTGTCTCTGGAGTTGTCCTCTGTCCCTCCTACCTCCCTCAACCCCGTCAGGCTGAAGCTGCTGTGTGCTCAACTGTCTGACTGCATCCTGGGTCTATTACAGTCCTCTGCCTCCGTCCTTCGACCCCTgaactccctccatctcctctccccctacctagAGGCTGTATCAAGGGCTCTGCTCAGAGAgctgggggagactggggagaggagggagaccgACAAGGAGTCCCGGCCTGTGAGAGCCTTCATGGCCTTGCATGCCTACATGGAACCCCCTCTTCTCCAGGAGCTtgtctcttcccttctcctcctccccaagGAGACCCTCATCACCCTGCGGGAGGGTgacggggagggagaggaggacagagagaagagcccCAGAGCAGCGGAGCTCAGTGTCTACGGACGCACGGCTCTACAGGTCCTCACtgagaccacctcctcctctgacGCCTCTTCATCCggctcccctgtcctcctcctctcccaggctcaCCTCCAAGGCCTGGCCACCCTGCTCCTCTCCTGCTCCAGCCCGTCTCTGGAGACCTTCCTCCTGCAGGCCCTGAGGACCCAGCCAGGCAACGCTAAACTCCTCCATACTGACATCCTGCTCCAGTGTCTCCGGGGGCCTCTCACTGCAGCCACCCAGGCCCTCGGGGTAGCTCTGCTGCAGAACTGCTCTGCTCACAGGCTCTGCTTCGAGGTGTGGTGCCTGAAGCCGCAGCACCTGGAGACACTGGCAGACCAGACGGAGACATTCCTACCGCTGGTCAACAGTTACCTGCGGACTGCAGCCAGAAAGGACCCCGCCAGGCCTAAAGAAGTTCAGACAGCGGTGCTGAAGGCCCTGAAGAAGGCCCTGTTCCCCAGGCTGAGCCTCTCTGTGCTGGGGCAGGAGACAGGGGAGGCCCTGGGGGCTGTGGAGGTTGTGGAGGCTCTGTCTAGTCTGGTTAGACTGACAGCTAAGGTCAAGGACATCAGAGAGCTCATCGCCTCCCTGCCTGCTGCCCTGCAGAAACTAGACGGCTTTGAGAGATGGCAGCTGGTGGACCCCATCAGtgctgtgctgtctgtctgtcccgaGGAGCTAGAGTTGTGGAGGACTTCGGTGCTCTCTGCTGCCCTCCGGTGGCTGAGCTCTTCCTACGGTCACAACAGAGACCAGAACACGGCACCACTCGCACAGGAGGACAGCATACTGAATAGACTGACTGAACTGCTGaCTTTTCCAGAAGACATCACAGCAGCAGAATGGAACAGCTTTGTCAAGGCTGGACTGAAGTGTCGCTACAGAGACCCTAACTTCCTGAGCACCCTAAACAGGATGTTGGATCTGATGTATGGAGGTAGTGAAGGACCTAAAGACCTGGTTCCTCTACCTACCATCCACATGATGGCCTCCAGCCACTCCCTGTTCCTACCCATCATGCTGGGAGACGAGGAGGACCTTAGTGGGAACACACAGGTTAAAGAggccctggtctctctcctgctcAGCCTAGTGAAGAGAAGTCCTGCTGTCTGTAGCAGCAGCCACTTCGTAGTCCTACTGGGAGGGTACGGCGCTACTCTCAGTACTACAGATCAGaatctgttactgctgctgcaggAGTACGAACGAAACGGCATCAGTCTGGTAGACTTTCAGTGCATGCTATGGGGCCCAGCGGCGGTGGAGCACCATAAGGCCCGGAGAAGCCTGGGCGTTTCCTTGTGGCAGCAACCCAGCTCTGAGGACCTGCTGGCTCTGCTCAGCCCTGACACCATGATCAACACCATCACTCACTTCCCCCTGCAACGCAGGATCatcctacagGAGGGTAAAGAGCTGATTTTCAAAGATGAGGAAGTGAAGGATCTTGGGAGTGTGTACGACCCTTGTTTCCTCCTGCCTCTCTTCAGCGCCATGCTTCAGCCAGAGTCTGTGATCGACTGTCTGAAGTTTGTGTCGAGTCACGGCCTTGGTGTGACGATGGTGTCCCTGAGTAGTTACGACCCCAAGCTGAGGGCAGCGGCCTATCAGGTCCTGGCTTCATACCACCATCATCTGGAGGCTGCTCGcttcagagagaagagacagctgctGTACCTGCTGGACATGGTAAAgaatgggatcagacagcagaaccTCAGGATGCCCTTCGTACTGACCACGTACATCACTAAGGTGGCCCGGCAGATGCTGAAACCAGAGGAGCACATGTACGTGGTGGTGAACCGGTTCCTGCTCTCCCATCAGTGTCTGGACTTCAGAAGGGTTCCAGAGTTCTTCAAACTGTTCTACAGCTGTGACATGGAGcacaAAATGGAGAGGGAGTGGATTCTGTCTGTCCTAGAGGAGGGCCTGAAAGACAGACAGTGTTATGATCTGCTGGACCAACAGGGGATCTTTCAGACACTGCTTGGATTCTGCTGCAGCCCACTCTGTGACCAGCACACTCAgACTCTGATAGTGAGAGTCCTGCACCAGGCTGGTCGTGTGACCAAAGCAGCCTACAACCTGACCAAGGGTCACGGGCTCCTCACCTGGATTCTGCAGCTGCTGGAGAAGAGacaTGTAGACCAGGGTCTGCTGAGTGCTGTGGTGGAGCTGCTCCATGTGCTGTGGTTCACCAACCTGGGCCAGAAGGAGACCCGTGGTGAGGGAgcctcctcttcatcatcctcttcctccacgGCCAAGGAGGACAAACCCCAGGGACACAGCACTCCAAAggttctccctctacccctcatcagCCAGTTCCTGTGTGTGGCCACCACCATCATCAGACATCTGAGacTGGTGAAGGCAGGTCAGCTGAGCCTGTATCTCCAGACTCTGAGCTCCATCCTGCAACATTGTGGGACAGCTCTGGGGGTCCACGgggaggctggctggctgacctTACGACCCCAGGCTCTTTCCTCCCAAGACGCCCTCGCCCTCCTCCACCGCTGGAGCACGCTGACCCACAATGCACCGCTCCTCAGCCAGCTGCAGACTGTGGCGGAGAAACACAAAGTCAAGGAGCTGCTGGGGTCGGGCAGGGAGAAAGGCCGAGGGAGAAGCTCCTCTGTCCAGGCCCAGGCCCAGGCCCGTTCTCACTCCCGACCAaaggaacaggaggaggaaggagaggtggagagacgagaggaggagAAGACTCTGTTGGACAAGTGTATTCCTCACCTCAGGAATATCTTTACCCACTGGGAGCCTGTCTCTCTTGTctgtcccccctcttctcccGCCAGCCCACCTCCCTCCCCTGACCCCCATACTCCCACCTCCACCCCTCTGGCTAACACCACAGCCCGTCTTCTCACCAGGTGGTTCCTGAACTCCTTGGTCGAGGGAGCCTCCACCTACGAGGACAAAAGGACAGTCCACTTCCTTCGCTGGTTCCAGAAGACTGTCCTGTCTCATAGATTCATAGTGGACTTGGTGCTGGCTGACCCTGCTGTGAGAGTGGACCTGCTCCGTCTATATCACCAGGCCTGTGAAGCCCAGGCCCAGACCCagccccagacccagacccagacccagccccagccccaggccCAGATCTCTTCCAGGGTAGAACACGTCCAGCTGTTCACCAACATTATGATCCAGCTCCTGGAGTCCAGAGGCTGCACGGAGAGTGACCTGCACAGGGCCGTGCTCACAGCATGCTCCCTAGGAACAACGTGTGATGACCAGACCACGAAGGAAGGTCTGATGTTGCTGTCTCTGTACATCCATGAGATGTGGAGCGGCGCGAAGAGCCCAGAGCTGTTCCTGAACCATGTCAGACTGGCGAATGAGATCCAGGGCTCTGTAGGAACCAAGGACCAGAAGAAGAATTCCAAACGACGttcccagacacacacagccctcAGAACCATCTGTAGCGACCTCCTCTCAGGACTGCAGTCTACTGTTGCACCATAGGGGGTTAAATAGCTGTGGCCCACATTACACCCTATTGAGTATGCTATTTCTTAACCAGGGCCCGTGGtctctggtcaaaaagtagtgaactactctgagtgtacaaaacattaagaacacctgctcttcccatgacatagactgaccaggtgaaagatatgatcccttattgatgtcacttgttaaatccacttcaaatcagtggagatgaaggggaggagacagattaaagaagctctatgttaggaaggtgttcctaatgtttgctacactctgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtctgtgtgtgtattttgcaTCTACATTTTCTAAAAGAagttgtgtgttttgtatgtaaaatcattcatttcatttttatttttttgttcaaaaCATTCACTTCGCTCTTTTATAAAATGTTGTAAAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2205553 lncRNA upstream 1054 37123984 ~ 37124641 (+) True G1928618
TU2205520 lncRNA upstream 86986 37036568 ~ 37038709 (+) True G1928586
TU2205517 lncRNA upstream 105280 37016674 ~ 37020415 (+) True G1928584
TU2205512 lncRNA upstream 117988 37007046 ~ 37007707 (+) True G1928579
TU2205471 lncRNA upstream 200920 36923383 ~ 36924775 (+) True G1928545
TU2205615 lncRNA downstream 101330 37292490 ~ 37293749 (+) True LOC110503436
TU2205650 lncRNA downstream 119793 37310953 ~ 37312672 (+) False G1928700
TU2205649 lncRNA downstream 120425 37311585 ~ 37312672 (+) True G1928700
TU2205655 lncRNA downstream 129847 37321007 ~ 37321206 (+) True G1928704
TU2205656 lncRNA downstream 133728 37324888 ~ 37325183 (+) True G1928705
XM_036961645.1 mRNA upstream 46375 36985873 ~ 37079320 (+) False LOC110503264
XM_036961646.1 mRNA upstream 46375 36985873 ~ 37079320 (+) False LOC110503264
XM_036961647.1 mRNA upstream 47709 36985873 ~ 37077986 (+) False LOC110503264
XM_021581639.2 mRNA upstream 165233 36942895 ~ 36960462 (+) True LOC110503268
XM_036961114.1 mRNA upstream 192205 36927919 ~ 36933490 (+) True LOC110503269
XM_036961317.1 mRNA downstream 2476 37193636 ~ 37218070 (+) False LOC110503265
XM_036961318.1 mRNA downstream 2476 37193636 ~ 37218070 (+) False LOC110503265
XM_036961319.1 mRNA downstream 2476 37193636 ~ 37239498 (+) False LOC110503265
XR_005039422.1 mRNA downstream 53317 37244477 ~ 37291414 (+) True LOC118944105
XM_036961693.1 mRNA downstream 100429 37291589 ~ 37375534 (+) False LOC110503436
TU2205478 other upstream 62151 37058006 ~ 37063544 (+) True LOC110503264
TU2205324 other upstream 463198 36661874 ~ 36662497 (+) True G1928430
TU2204947 other upstream 955224 36169416 ~ 36170471 (+) True G1928169
TU2204967 other upstream 956366 36167389 ~ 36169329 (+) False G1928170
TU2204953 other upstream 956409 36166626 ~ 36169286 (+) False G1928170
TU2205476 other downstream 10699 37201859 ~ 37203186 (+) True LOC110503265
TU2205616 other downstream 100502 37291662 ~ 37292416 (+) False LOC110503436
TU2205711 other downstream 243743 37434903 ~ 37435441 (+) True G1928752
TU2205719 other downstream 254707 37445867 ~ 37464638 (+) False G1928756
TU2205722 other downstream 262377 37453537 ~ 37464638 (+) True G1928756

Expression Profile