RNA id: TCONS_00006028


Basic Information

Item Value
RNA id TCONS_00006028
length 905
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_002695
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17900311 ~ 17911539 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAACTGGGCCAGaacctcctcttcctcctcatcGGTCAAGTCTCTTTCAAAGAGTTGCTTGGTCACAAAGTGCCTGTACTGCAGGAGTTCATCTGACACCAGACACGACTCTGAGCAGAAAAGACTTTGCGAGTTTCAAGGTCCATGGTATGTCCAAATGATGAAACCAGCGTAAAGAACACAAGCACAGTTGGACGAGCCACagagaaaaacagaaaacaacacaGCAGTTTCAGCAAAATGCACCACTGCTCGGTGACATTTTCAAACCACAAACCTTGAAAGACGGCAGAACAACACCGGGAAAGAATCACCTAATTATATGCAGCAAACGCTACAGCTAGCAAGCAGGACGATGCACAGCTTATTCCAGTGATTGCTCCAATTCTCTTTGTTAAAGTTCCCCACAATCTATTGCTTTCAAAGTTTTTAATAAGCATATCTCCACACCAGGTGTGTGTCATATTAGTTTGAGctcttttattgttgtttttgaatGAGAAATTGCTGTAATTACCCAAACTGTCACACGGCTTATCACAGTGTTTAATCCATTCAATGGCGAAACCCACGTTTGACGCCAAGTGCCAAAATCAGTTTGACAACCTAGCTTGGACACTTAATTAATTTTCCACCACGGTCTTCTCACTAACACTTACTGCGCGATGCAAAAATTTTCATGCTAACAGTTCACCATAATGCTATCATTTTTCATTAAGACCTAGTTTACACTGAAACACACTTGAAATTACTGATGAAACCAAGCAGCTGTGTCCCTTGAAAGCTCTACAACAACGTAATCCCCAGTCTCAACATcaacgctcacacacacatgtggATTAGGTTGTAGCGAGGGCAGAGTGAGAAAATCAGACACATAAGCTGTGAATCAGTCCTCTAAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005008 lncRNA downstream 154966 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00005006 lncRNA downstream 154966 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00005011 lncRNA downstream 154967 17731293 ~ 17745344 (-) False XLOC_002694
TCONS_00005007 lncRNA downstream 154967 17731431 ~ 17745344 (-) False XLOC_002694
TCONS_00005010 lncRNA downstream 154969 17731447 ~ 17745342 (-) True XLOC_002694
TCONS_00005014 lncRNA upstream 76595 17988134 ~ 17988749 (-) True XLOC_002696
TCONS_00006029 lncRNA upstream 362475 18274014 ~ 18282956 (-) True XLOC_002697
TCONS_00006030 lncRNA upstream 372875 18284414 ~ 18286943 (-) True XLOC_002698
TCONS_00006031 lncRNA upstream 1177457 19088996 ~ 19092606 (-) True XLOC_002701
TCONS_00005758 lncRNA upstream 1607346 19518885 ~ 19521704 (-) True XLOC_002703
TCONS_00005009 mRNA downstream 154937 17731432 ~ 17745374 (-) False XLOC_002694
TCONS_00005005 mRNA downstream 189674 17700016 ~ 17710637 (-) True XLOC_002693
TCONS_00005002 mRNA downstream 312479 17552733 ~ 17587832 (-) False XLOC_002691
TCONS_00005001 mRNA downstream 349380 17543680 ~ 17550931 (-) True XLOC_002690
TCONS_00005000 mRNA downstream 350072 17543276 ~ 17550239 (-) False XLOC_002690
TCONS_00005012 mRNA upstream 75749 17987288 ~ 17988779 (-) False XLOC_002696
TCONS_00005013 mRNA upstream 75896 17987435 ~ 17988779 (-) False XLOC_002696
TCONS_00005015 mRNA upstream 380432 18291971 ~ 18468385 (-) False XLOC_002699
TCONS_00005017 mRNA upstream 380432 18291971 ~ 18492617 (-) False XLOC_002699
TCONS_00005016 mRNA upstream 380432 18291971 ~ 18492617 (-) False XLOC_002699
TCONS_00005004 other downstream 273058 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005003 other downstream 330159 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00004999 other downstream 357289 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 381277 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004997 other downstream 398907 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00005042 other upstream 2572275 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005057 other upstream 2748878 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005060 other upstream 2996903 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005063 other upstream 3129118 21040657 ~ 21043408 (-) True XLOC_002726
TCONS_00005070 other upstream 3632362 21543901 ~ 21544517 (-) True XLOC_002729