RNA id: TCONS_00053388


Basic Information

Item Value
RNA id TCONS_00053388
length 389
lncRNA type retained_intron
GC content 0.31
exon number 2
gene id XLOC_027084
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7391110 ~ 7409313 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCATCACTCCTGCGCTCAAGCTCCTCGACTCCTCTTCAAAGGTCACATAGTGTATTTCAGCCATGTCTGAGGGGTAAGTGTTATCTTTATTAGGCTGTTGACCCTGTCAATGTCATGTGCTCATTCAAAACGGCTTATTTACACCAAGTTAAAATGATGGGAATTTTGTATGTTCTCAATATATAATGTACATAAGAACATAAATAACTCAAAATGTATAAATTAGTGCTATCAAACTATTAATTTCGTCCATGCAAGATAAAAATTTTGTGTTTACTTGTGTACAATGTATTTATAAGTATAAatgcacatatactgtacataaactacataaaatatacaaaagcaatatgaatacaaatatttttatattatatgcacTGAAAAA

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-75 Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex. Is expressed in heart and heart tube.

Ensembl:

ensembl_id ENSDART00000163817

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057598 lncRNA upstream 279440 7111729 ~ 7112022 (+) True XLOC_027082
TCONS_00057597 lncRNA upstream 371440 7005809 ~ 7020022 (+) True XLOC_027080
TCONS_00053380 lncRNA upstream 487223 6903549 ~ 6904239 (+) True XLOC_027078
TCONS_00053377 lncRNA upstream 506402 6833743 ~ 6885060 (+) False XLOC_027077
TCONS_00053370 lncRNA upstream 699046 6678443 ~ 6692416 (+) True XLOC_027075
TCONS_00053391 lncRNA downstream 18255 7415280 ~ 7506470 (+) False XLOC_027085
TCONS_00057599 lncRNA downstream 148635 7545660 ~ 7554621 (+) False XLOC_027087
TCONS_00057600 lncRNA downstream 148635 7545660 ~ 7583552 (+) False XLOC_027087
TCONS_00057601 lncRNA downstream 148682 7545707 ~ 7587145 (+) False XLOC_027087
TCONS_00057602 lncRNA downstream 148758 7545783 ~ 7549822 (+) False XLOC_027087
TCONS_00053375 mRNA upstream 397179 6833583 ~ 6994283 (+) False XLOC_027077
TCONS_00053392 mRNA downstream 111291 7508316 ~ 7538138 (+) False XLOC_027086
TCONS_00053393 mRNA downstream 111292 7508317 ~ 7543967 (+) False XLOC_027086
TCONS_00053394 mRNA downstream 111298 7508323 ~ 7544571 (+) False XLOC_027086
TCONS_00053395 mRNA downstream 111307 7508332 ~ 7544371 (+) False XLOC_027086
TCONS_00053396 mRNA downstream 111312 7508337 ~ 7544687 (+) False XLOC_027086
TCONS_00053383 other upstream 227588 7163758 ~ 7163874 (+) True XLOC_027083
TCONS_00053382 other upstream 366179 7025167 ~ 7025283 (+) True XLOC_027081
TCONS_00053381 other upstream 476611 6914716 ~ 6914851 (+) True XLOC_027079
TCONS_00053350 other upstream 1606591 5778229 ~ 5784871 (+) True XLOC_027061
TCONS_00053336 other upstream 1875600 5506952 ~ 5515862 (+) False XLOC_027055
TCONS_00053390 other downstream 18312 7415337 ~ 7415437 (+) True XLOC_027085
TCONS_00053415 other downstream 737569 8134594 ~ 8134710 (+) True XLOC_027099
TCONS_00053421 other downstream 1106662 8503687 ~ 8503801 (+) True XLOC_027102
TCONS_00053451 other downstream 2195506 9592531 ~ 9598700 (+) True XLOC_027123
TCONS_00053480 other downstream 3309730 10706755 ~ 10713584 (+) False XLOC_027140

Expression Profile

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