RNA id: XM_036961988.1


Basic Information

Item Value
RNA id XM_036961988.1
length 1754
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110503403
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 40027973 ~ 40121905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAACCTCGACCTTCTTTATCCTCATGACCAAATCATTTCAATGTTCATTCTCTTTAAAAATGAGTTACCTCCAAACTGATATATCTTTACCCCATTTCAAGTTTAGTTTGTAGTTCTAGAGGTTGTGTCCTTTTGTAATTTTGGGAGGCTGAAAAGCCCATCACCATCCAATGTTTGTTTGCCTGCTCAtggcccctctcctctctccacccatcACTCCCAATCTCGGCATCCCCATCCCCCACTCCGCGGTGTTCCCAACGCCGCTGCTAGCCGGATAACGCTGTAGCAAAGTGAGAAGCTAGAACACCGATAGCGTTAACATAGCCAGTGTCAACGACTTTGAAGATACCGGAACAAAATAAGGAATTTAGATAACCACATTTGTCCATCACATTGATTTGCATATCCACTCCCACCTCTTCCTCATTTGCATACAACGAGAATGGCGAGCGGGCACCCCACTGACAAATACAGTTTCATGTACCAACCAGACACGCACAAGagtaaGAACAGATTATCCAGCAGTATGAATCCCGTCTACAGTCCTGTTCAGCCTGGAGCTCCCTACGGTAACCCCAAGAACATGGCCTACACAGGCTACCCTGGAGGTTACCCTACTGCTGCTCCCACCTACACACCTAACCTCTACCAAACGGGAAATCCAGGGTACCCACCAGgataCACAACAGCGGGTACTCCATATAAAGTGCCCCCCACCCAGATGAACGGAGCCCCCCCGCCCTACTCCCCCTCTCCCAACCCCTACCAAACAGCCATGTACCCCATCAGAAGTGCCTACCCCCAGCAGAGCATGCAGAACCTGCAGAACTTATATGCACAGgcagCAGCGTATTATGGCCAGCCAGTGTATGCGGCCCAGCCCTATgCGTATTACACCCAGCCTGTGTATGCTGCTCAGCCTCAGCCTCATGTAATCCACCACACTACAGTGGTTCAGCCAAACAGCCTGCCCTCAGCCCTCTACCCCGCCCCGGTCCAAGCCCCTAGAAACAATGGAATGGCTGCCATGGGGATGGTTGCCGGGACCACCATGGCTATGAGTGCAGGAACCCTGCTGACCACACCTCAGCACGCTCAGCTGGGAACGCACCAGCACGTCACCATGCCGCAGTTCCGGCCCCAAGGTGCACCTGGATACAGCTATGTCCCGCCCCACTGGTAGACCCCCACCCCACGAGAAATCTGAAGTCCGACATGTTATGCAACTACTCCAGTCTTACACAGGCTTCTTACGGTCACCATGGCAACGTCACATCTGTCTGCAACAACAAGACTAAAGTGTTGCAGAGGCTTCTTACGGTCACCATGGCAACGTCACACCTGTCTGCAACAACAAACCTAAAGAGCAACGGACACTTGCTGCATCCTCGAGGGTTTTACAAAAGCTGCTTGATATTTTGTTGGTTTACTCAACGATTCTTTTCTTTTCCTCCTTTGATTCGCCAATATGTCGTGTCATTACATCGTtttttacattgttacatcatcattGGAACTCCAGAGTGATTGACCAATCGCGAGTGTCTGTTGCTCTGCTCGTGTACTGtgtgctgctgctgtgtgtcagAGGTGGGAATGTACTGGCCACGTCCTGCTCCATCCCTGTCATCATCACCAGCTTCATCATCACCACCTTTATCATCACCAGCTTCATCATCACCACCTTCATCATCACCACCTTTATCATCACCACCTTCATCATCACCACCTTCATCATCACTACCTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2209145 lncRNA downstream 624 40025935 ~ 40027349 (-) True G1931259
TU2209368 lncRNA downstream 13688 40013887 ~ 40014285 (-) True G1931448
TU2209352 lncRNA downstream 54513 39972670 ~ 39973460 (-) True G1931438
TU2209335 lncRNA downstream 80555 39947185 ~ 39947418 (-) True G1931424
TU2209334 lncRNA downstream 81265 39946498 ~ 39946708 (-) True G1931423
TU2209414 lncRNA upstream 13658 40135561 ~ 40135830 (-) True G1931493
TU2209426 lncRNA upstream 29322 40151225 ~ 40151455 (-) True G1931505
TU2209440 lncRNA upstream 37815 40159718 ~ 40159920 (-) True G1931519
TU2209476 lncRNA upstream 71683 40193586 ~ 40194530 (-) True G1931551
TU2209566 lncRNA upstream 166857 40288760 ~ 40289166 (-) True G1931640
XR_005039403.1 mRNA downstream 2812 40023797 ~ 40025161 (-) True LOC118944096
XM_021581561.2 mRNA downstream 26313 39984918 ~ 40001660 (-) True LOC110503195
XM_036961716.1 mRNA downstream 44539 39817311 ~ 39983434 (-) False LOC110503477
XM_036961568.1 mRNA upstream 248307 40370210 ~ 40380480 (-) False LOC118944043
XM_036961570.1 mRNA upstream 1240639 41362542 ~ 41375708 (-) True LOC118944045
XM_036961521.1 mRNA upstream 1655053 41776956 ~ 41865547 (-) False zbbx
XM_036961523.1 mRNA upstream 1655053 41776956 ~ 41865547 (-) True zbbx
XM_036961134.1 mRNA upstream 1866820 41988723 ~ 42023198 (-) False LOC118944009
TU2208958 other downstream 677334 39331834 ~ 39350639 (-) True G1931133
TU2208702 other downstream 940970 39085575 ~ 39087003 (-) True dhx34
TU2208705 other downstream 952840 39074316 ~ 39075133 (-) False dhx34
TU2208725 other downstream 1047993 38976417 ~ 38979980 (-) False G1930981
TU2209757 other upstream 343717 40465620 ~ 40465867 (-) True G1931785
TU2210500 other upstream 1034468 41156371 ~ 41156733 (-) True G1932422
TU2211565 other upstream 1866934 41988837 ~ 42003428 (-) True LOC118944009
TU2211644 other upstream 1951224 42073127 ~ 42075939 (-) True G1933401
TU2211802 other upstream 2277994 42399897 ~ 42400327 (-) True G1933529

Expression Profile