RNA id: XM_036961527.1



Basic Information


Item Value
RNA id XM_036961527.1
length 5959
RNA type mRNA
GC content 0.50
exon number 48
gene id si
representative False

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41012678 ~ 41125378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGAGGTCTTCCAAGAGTAATGTGGATACTTTCAGTAAAGTGGTTTCCACTGTAGATGAAGGTTGCATACTGGACTGCAAACTCCGGACACTAGTGCGTCAATGCAAAATGGGGATTCGGAAGTTTTCAGGGTTGGAGGTGACTCTGACAGTCCTATTCCTGCTGGTGACAACAGTGGCTGTTGCTTTAGTTGTTCTAATGGCTACTGGGGAACCTGCAGTCATCAAAgacgAGACCACAGGCACCGTGGTTCCAGAATGTCCCGTTATTCCACTGGGGGAGAGAGTCGACTGTTTCCCTGACGCCGGTGCATCTAAGCTGGGGTGTCTGCAGCGAGGCTGTTGTTGGAGTCCATTGGACGAGAGAAACGCTCCATGGTGCTTCTTCTCCACCAATCACGGCTACTCGGTGGTGCGCGAGGAGAGACCCAACATCTACAGCTTGTCGGCCCTTCTGAAAAGGAAGGTTGCCCCCTCTCTGTTTGGTGAAGACATAGAGGAGCTGACTTTCCATGCTGACTTGCAGACAGTGAACCGACTGAGATTCaagATCTCAGATGCCCATAACCAGCGATTTGAGGTTCCCCATGAGCACATCAAGCCCCCTGCCACCCATCCCTCTGGTTCCTTTAACTACGAGGTAGAGCTCACACACAACCCCTTCGGCTTCCAAGTACGCAGGGCGGCCACCAAGAAAGTCCTgtttgacACCACAATGGGTCCGCTGGTGTTTGCTGATCAGTACTTGCAGCTGTCTGCCAGACTGCCATCCCATAATATATACGGTCTGGGAGAACACGTCCATCAGAACTATCGTCATGACACCAACTGGAGAACGTGGCCTATCTTCTCACGAGATTCATTCCCTAATGGAGGAACACATAACCTCTATGGTCATTATCCCTACTTCCTTTGTCTGGAGGACGAGAGTGGCAAGTCCTTCGGAGTCTTCCTGATGAACAGCAATGCTATGGAGGTCACGCTGCAGCCGGCTCCAGCGGTGACCTACAGAACCATTGGAGGAGTTCTGGACTTCTACATCCTGCTAGGAGACACACCTGAACAGGTGGTCCATGAGTTCCTGGAGcTGATCGGCATGCCGATGATTCCTCCATACTGGTCTCTAGGCTTCCAGTTGTCTCGTTGGGACTACGGCAGTCTAGAGGAAGTCAAGAGAACAGTGGAGAGGAACCGAGCCGTCGACCTGCCATATGATATCCAGTACACTGACATTGACTATATGGAAGATAAGAAGGACTTCACTTACGATGAAGTCAACTTCAAAGACCTCCCTCAGTTTGCTGATTACCTGCACGAGAAGGGACAGAAATACATTCTTATATTGGACCCGGCAATAGCCACCAGTAAGAGGATCAACGGGCCGTATGAGGCCTATGACCGAGGAACACAGAAGAACGCTTGGGTCACTGAGGCTGATGGGAAAACACCTATAGTGGGAGAGgtctggcCAGGTGTGGCAGTGTTTCCAGACTACACTAACCCCAGCTGTAAAGAGTGGTGGACTGATGAGTACGTCAGATTATTCAAAGAAATCAAACATGACGCTCTGTGGATTGATATGAATGAAGTGTCTAACTTCATGAAAGGCTCCATCAAGGGATGTGATGACAACAATCTCAACTACCCTCCCTTCACTCCTAGTATCCTGGATGGGGTGTTGTACAGTAAGACTCTGTGTATGGACTCGAAACAGACCTGGGGAAACCACTATGATGTCCACAGTCTCTATGGATACGCCATGGTTCTAGCCACCAGAGATGCTCTAGAGCGTGTGTTTGAGGGGAACAGGAGCCTGATACTGACCCGCTCGTCCTTCCCTGGTGTGGGGAAGTACTCCGGCCACTGGCTGGGTGACAATGCTGCTAACTGGAACGACATCAAATGGGCCATACCTGGCATGCTGGAGTTTGGCCTGTTCGGAATCCCCTACATCGGTGCTGATATTTGCGGTTTCTTTGACGACGTGTCAGAAGAGTTGTGTCGTCGTTGGATGCAGGTTGGAGCATTTTATCCCTTCAGCAGGAACCACAACGCCCAGCATTACAAGcccCAGGACCCGGCAGTGTTTGGTGTAGACTCACTGCTGTTGAATACCTCTAAACATTACCTGAATATCCGGTACACCCTTCTCCCCTACCTCTACACCCTCTTCTACAAGGCTCACACTACCGGGGACACCGTGGTCCGGCCCGTCATGCACGAGTTCTACTCTGACAGTAACACCTGGACAGTGGACCGCCAGTTCCTCTGGGGGAAACACCTGCTCATCACACCTGTACTGGACCCTGGGGTGGAGTGGATCCAAGCCTACGTCCCAGACGCTGTGTGGTTTGACTATGAAACGGAAGAGCGAATTACAGTCCGTAAGCAGCAAGTTCAGATGTACCTGCCTGCAGACAAGCTTGGTTTACACATCAGGGGCGGAGCTATTCTACCTATTCAGAGACCTGCGGTCACAACTGTTTACAGCCGGCGTAACCCCATGGGTCTGATCGTTGCGCTCGATGACAACAACAGAGCAGCAGGAGAGCTATTCTGGGATGACGGAGACTCTCGAGacaccgTTGAAACTGGCAACTACATGCACTACCAGTTCTCTTTGAACAATGGCGAGTTGACCATCCAGGTGATGCATTCTGGGTACAATGACCCAAACAACCTGAAGTTTGAGAACATCACCGTGTTGGGAGTCTCCAGTCCCCCCATGACTGTCAATGTtacccacaacaacaacaatgtcGTCGTATCTACTTTCAAATACGACACCGTCAAGCAGGTGTTGTATCTGAAAGATTTGAATCTGATTCTGGGTCAGAACTACACAGTGCGATGGGACCAGGTCAGTGATCCAACGCCAGAGACCCAGCGCTTTGACTGCTACCCAGAGCCCAACAGTGACCCGACCAAGTGTAGGGCCAGGGGCTGCATCTGGGGGACGTCTACCACTGAGGGCGTCCCGTGGTGTTACTACCCTGAAGACTATGGTTACACCGCTACCACGGTGATAGAGCAACCTTCTGGCTGGAGCTTCAACATCACGCGGAACGCTGGGCTCCGGAGCAGCGGGAGACCAGAATCTCCAGACATAAACTCTCTCAGAGTGGAGATCAAATACCACACTGCGGACCTACTGCAGTTTAAGatcTATGACCCTACAAATAAGCGATTTGAGGTTCCTGTCCCCCTTAATGTCCCCTCCACcccagagacagatgagaccaagAGACTTTATATCGTCCAGGTCAAAAAACAGCCTTTTGGTATCCAGGTCATCAGAAAGAGCACTGGCACATTAATaTGGGACTCGGCGTTGCCAGGCTTTACCTTCTCAAATCTGTTCATCCAGGTGTCAACACGTCTGTCTTCAGATTATGTCTATGGCTTTGGAGAGACAGAACACACCTCATACAAACACGATCTCAACTATCATACCTGGGGCATGTTCACAAAGGACCAGCCTCCTGGGTATAAGTTGAATGGCTATGGTGTGCATCCCTTTTATATGGGTCTAGAGACGACCGCCGATGCTCATGGTGTACTACTGCTGAACAGCAACGCTATGGATGTGACCTTCCAGCCGACCCCTGCCCTGACCTATCGTACCCTGGGGGGCATCCTGGACTTCTACATTGTGATGGGACCCACCCCAGAACTGGTGGTGGAGGAGTATACTGCCCTGATTGGACGTCCCGTGCTCCCTGCCTATTGGTCCCTTGGGTTCCAGCTCTGTCGCTATGGATACGCCAACGACACAGAGATAGCAGACCTCTACAGAGAAATGAGAGCAGCAGGAATACCCTACGATGTGCAGTATGCAGACATAGACTACATGGAGCGCCAGCTGGACTTTGTTCTGGACAGCCAGTTCCAGGGTCTACCAGCCCTGGTGGACCACATGAGAGGAGAGGGCATGAGATTCATCTTCATACTGGACCCTGCCATCGGTGCCAACGAGACAACGACATACACTGCCTTTGACCGTGGTGTAGAAGAAGACGTATTCATCAAATGGCCCAAGCAGCTCAGCAATGACATCGTCTGGGGGAAgGTATGGCCTGACTTCCCTGGTGTTGTAGTCAATGAGTCTGTAGACTGGGACACGCAAGTAGAGATCTATAGGTCCTATGCGGCATTCCCAGACTTCTTCATGAATCGTACAGCAACGTGGTGGCATAGGGAGATTTCAGATTTCTACAATAAAACCATGAAATTTGATGGACTCTGGATCGACATGAACGAACCATCCAGCTTTGTCCATGGAACCGTTGGAGAGAAGTGTCTGGGTCCCCCTGTCTACGACAACCCCCCATACATGCCACcccTGGAATCCAGCCACCGTGGTCTCAACCATAAGACTCTGTGCATGAACAGCCAACAGCACCTCAGTGATGGTACCCCGGTCAAACACTATGACGTACACAACCTGTATGGATGGTCTCACACCAAACCCACATACGACGCCTTGCTGAGTGTGACGGGCAAGCGAGGGATAGTGGTGACCAGGTCGACCTACCCCTCCAGTGGGAAGTGGGCTGGACACTGGCTGGGAGACAACAACTCCAGCTGGGATCAACTCTACAAGTCAatcatagGAATGATGGAGTTCAGTCTGTTTGGATTTTCTTATactgGAGCTGATATCTGTGGGTTCTTCAATCCTGCCGAGTTTGAGATGTGTCTTCGCTGGACTCAGCTTGGTGCCTTCTATCCTTACTCTCGCAACCACAACGGCAAGTTCAACCCGagaCAAGACCCTGTATCGTGGAATGCATCGTTTTCTGAGGCTTCTCGTGATGTGTTGAATATCCGCTACACTCTCCTTCCCTACCTCTACACACTCATGTTTTACGCCCACAGCGAAGGAAGTACAGTGGTCCGACCGTTGCTGCAtgaGTTTGTGAGCGACAGGAAGACGTGGGATATCCACAGACAGTTCCTGTGGGGCCCTGCTCTGCTCATCAGCCCGGTCCTGGATGAGGGGGCCAGAGAGGTACAGGGCTACATCCCAGACGACCTCTGGTATGACTTCCACACGGCCAAGGCTATTGAGGTGAAGGGCCAGATGATAACCATGCCTACACCTCTAGACCACATCAACCTCCACGTGAGAGGAGGATACATCCTGCCCTGGCAGAAACCAGAGAACAACACAcactacagTCGGAAGAATCCTCTGGGGCTGATCGTTGCCCTGAGCGACAATGGAACTGCACAAGGTTCCCTGTTCTGGGATGATGGGGAGGGGATCGatACGTATGCGAGTAAGCAGTACCTACACAACACTTTCATAGTTGCTTCGAACACCCTGACCTGCCATGTGATGGTCAATGGTCTGCTGGTGGCTGACAGGCTGACCCTGGGTGTGGTGAACGTGTGGGGGGTTGGCAGCGTTCCTGTCACAGAGGTCACCCTACGAGATGGACCAGGCTCAGTAAAACAGGTCACCTTTCAACACAACACCAGCACTAAGGTGCTGATTGCCGATGCCACTGATCTATCTTTCCGCGTGGACCAGAACTTCACGCTCATATGGAAAACAAACACCTAATCACATTCACATCAACACTGCACTGCCATACAATGTGTTATTtaaaacagtggtggaaaaagtacccaataaAAGTATTGATTCCTTAATTAAAAAAAGTTAAAGTGAAAGTCTctcagtaaaatactatttgaataaaggtttaaaattattttgttttatatataCTTAAGTtgaaaaagtaaatgtaattgctaaaatatacttaagtatcaaaagtaaaagtataaattatttTAAATTCCTTAACGCAAACCAACCGGCACcatttgtttttatttgaatgtatttttacggattggcacactccaacactccaacactccaacactccaacactccaacaccgcaacactccaacactccaacactccaacaccgcaacactcca

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2210321 lncRNA upstream 6036 41006288 ~ 41006642 (+) True G1932269
TU2210312 lncRNA upstream 10237 41002220 ~ 41002441 (+) True G1932260
TU2210302 lncRNA upstream 19848 40992589 ~ 40992830 (+) True G1932250
TU2210301 lncRNA upstream 21600 40990849 ~ 40991078 (+) True G1932249
TU2210288 lncRNA upstream 29855 40982230 ~ 40982823 (+) True G1932238
TU2210470 lncRNA downstream 4364 41129742 ~ 41130250 (+) True G1932392
TU2210472 lncRNA downstream 4992 41130370 ~ 41130739 (+) True G1932394
TU2210473 lncRNA downstream 5406 41130784 ~ 41131042 (+) True G1932395
TU2210474 lncRNA downstream 5714 41131092 ~ 41131373 (+) True G1932396
TU2210476 lncRNA downstream 6303 41131681 ~ 41131918 (+) True G1932398
XM_021581568.2 mRNA upstream 40299 40962442 ~ 40972379 (+) False LOC110503202
XM_021581569.2 mRNA upstream 40299 40962699 ~ 40972379 (+) True LOC110503202
XM_021581580.2 mRNA upstream 175177 40810178 ~ 40837501 (+) False LOC110503211
XM_036961741.1 mRNA upstream 175177 40812827 ~ 40837501 (+) True LOC110503211
XM_036961742.1 mRNA upstream 175246 40810178 ~ 40837432 (+) False LOC110503211
XM_036961569.1 mRNA downstream 141389 41266767 ~ 41267279 (+) True LOC118944044
XM_036961130.1 mRNA downstream 898104 42023482 ~ 42078730 (+) True LOC110512028
XM_036962013.1 mRNA downstream 1014691 42140069 ~ 42240339 (+) False LOC110503413
XM_036962012.1 mRNA downstream 1014691 42140069 ~ 42333457 (+) False LOC110503413
XM_036962011.1 mRNA downstream 1014691 42140069 ~ 42335470 (+) False LOC110503413
TU2209850 other upstream 450772 40561212 ~ 40561906 (+) True G1931869
TU2207278 other upstream 907146 40089400 ~ 40105532 (+) False G1929916
TU2207269 other upstream 934346 40076476 ~ 40078332 (+) True G1929909
TU2207252 other upstream 960328 40049364 ~ 40052350 (+) False G1929901
TU2207223 other upstream 984161 40025935 ~ 40028517 (+) False G1929891
TU2210655 other downstream 204672 41330050 ~ 41338188 (+) True G1932564
TU2211289 other downstream 1169470 42294848 ~ 42335194 (+) False LOC110503413
TU2211428 other downstream 1235878 42361256 ~ 42365260 (+) True G1933231
TU2211452 other downstream 1264049 42389427 ~ 42390261 (+) True G1933255
TU2211839 other downstream 1370202 42495580 ~ 42500990 (+) True G1933563

Expression Profile


XM_036961527.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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XM_036961527.1 Expression in each Bioproject

Bar chart with 20 bars.
XM_036961527.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.