RNA id: XM_036961525.1


Basic Information

Item Value
RNA id XM_036961525.1
length 6085
RNA type mRNA
GC content 0.50
exon number 48
gene id si
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41012678 ~ 41125378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgcacacgcacacacacacacacacacgcacacacacacatactatctcTCTTTCTTGCTATCGCTTACACACAGATATAAATACATACAGAGTATTGATTTACATGTTCACACACCAACACATATACAGGCAGTGTTATATGATCAGTAGGACCTAATTGCAGAGTGGTACGATATAACGTGGATGAGACAGACGACGGCGCGCCGGAGTAGTAAGGCAAGAAGCAGTGTGAGATGGGGATTCGGAAGTTTTCAGGGTTGGAGGTGACTCTGACAGTCCTATTCCTGCTGGTGACAACAGTGGCTGTTGCTTTAGTTGTTCTAATGGCTACTGGGGAACCTGCAGTCATCAAAgacgAGACCACAGGCACCGTGGTTCCAGAATGTCCCGTTATTCCACTGGGGGAGAGAGTCGACTGTTTCCCTGACGCCGGTGCATCTAAGCTGGGGTGTCTGCAGCGAGGCTGTTGTTGGAGTCCATTGGACGAGAGAAACGCTCCATGGTGCTTCTTCTCCACCAATCACGGCTACTCGGTGGTGCGCGAGGAGAGACCCAACATCTACAGCTTGTCGGCCCTTCTGAAAAGGAAGGTTGCCCCCTCTCTGTTTGGTGAAGACATAGAGGAGCTGACTTTCCATGCTGACTTGCAGACAGTGAACCGACTGAGATTCaagATCTCAGATGCCCATAACCAGCGATTTGAGGTTCCCCATGAGCACATCAAGCCCCCTGCCACCCATCCCTCTGGTTCCTTTAACTACGAGGTAGAGCTCACACACAACCCCTTCGGCTTCCAAGTACGCAGGGCGGCCACCAAGAAAGTCCTgtttgacACCACAATGGGTCCGCTGGTGTTTGCTGATCAGTACTTGCAGCTGTCTGCCAGACTGCCATCCCATAATATATACGGTCTGGGAGAACACGTCCATCAGAACTATCGTCATGACACCAACTGGAGAACGTGGCCTATCTTCTCACGAGATTCATTCCCTAATGGAGGAACACATAACCTCTATGGTCATTATCCCTACTTCCTTTGTCTGGAGGACGAGAGTGGCAAGTCCTTCGGAGTCTTCCTGATGAACAGCAATGCTATGGAGGTCACGCTGCAGCCGGCTCCAGCGGTGACCTACAGAACCATTGGAGGAGTTCTGGACTTCTACATCCTGCTAGGAGACACACCTGAACAGGTGGTCCATGAGTTCCTGGAGcTGATCGGCATGCCGATGATTCCTCCATACTGGTCTCTAGGCTTCCAGTTGTCTCGTTGGGACTACGGCAGTCTAGAGGAAGTCAAGAGAACAGTGGAGAGGAACCGAGCCGTCGACCTGCCATATGATATCCAGTACACTGACATTGACTATATGGAAGATAAGAAGGACTTCACTTACGATGAAGTCAACTTCAAAGACCTCCCTCAGTTTGCTGATTACCTGCACGAGAAGGGACAGAAATACATTCTTATATTGGACCCGGCAATAGCCACCAGTAAGAGGATCAACGGGCCGTATGAGGCCTATGACCGAGGAACACAGAAGAACGCTTGGGTCACTGAGGCTGATGGGAAAACACCTATAGTGGGAGAGgtctggcCAGGTGTGGCAGTGTTTCCAGACTACACTAACCCCAGCTGTAAAGAGTGGTGGACTGATGAGTACGTCAGATTATTCAAAGAAATCAAACATGACGCTCTGTGGATTGATATGAATGAAGTGTCTAACTTCATGAAAGGCTCCATCAAGGGATGTGATGACAACAATCTCAACTACCCTCCCTTCACTCCTAGTATCCTGGATGGGGTGTTGTACAGTAAGACTCTGTGTATGGACTCGAAACAGACCTGGGGAAACCACTATGATGTCCACAGTCTCTATGGATACGCCATGGTTCTAGCCACCAGAGATGCTCTAGAGCGTGTGTTTGAGGGGAACAGGAGCCTGATACTGACCCGCTCGTCCTTCCCTGGTGTGGGGAAGTACTCCGGCCACTGGCTGGGTGACAATGCTGCTAACTGGAACGACATCAAATGGGCCATACCTGGCATGCTGGAGTTTGGCCTGTTCGGAATCCCCTACATCGGTGCTGATATTTGCGGTTTCTTTGACGACGTGTCAGAAGAGTTGTGTCGTCGTTGGATGCAGGTTGGAGCATTTTATCCCTTCAGCAGGAACCACAACGCCCAGCATTACAAGcccCAGGACCCGGCAGTGTTTGGTGTAGACTCACTGCTGTTGAATACCTCTAAACATTACCTGAATATCCGGTACACCCTTCTCCCCTACCTCTACACCCTCTTCTACAAGGCTCACACTACCGGGGACACCGTGGTCCGGCCCGTCATGCACGAGTTCTACTCTGACAGTAACACCTGGACAGTGGACCGCCAGTTCCTCTGGGGGAAACACCTGCTCATCACACCTGTACTGGACCCTGGGGTGGAGTGGATCCAAGCCTACGTCCCAGACGCTGTGTGGTTTGACTATGAAACGGAAGAGCGAATTACAGTCCGTAAGCAGCAAGTTCAGATGTACCTGCCTGCAGACAAGCTTGGTTTACACATCAGGGGCGGAGCTATTCTACCTATTCAGAGACCTGCGGTCACAACTGTTTACAGCCGGCGTAACCCCATGGGTCTGATCGTTGCGCTCGATGACAACAACAGAGCAGCAGGAGAGCTATTCTGGGATGACGGAGACTCTCGAGacaccgTTGAAACTGGCAACTACATGCACTACCAGTTCTCTTTGAACAATGGCGAGTTGACCATCCAGGTGATGCATTCTGGGTACAATGACCCAAACAACCTGAAGTTTGAGAACATCACCGTGTTGGGAGTCTCCAGTCCCCCCATGACTGTCAATGTtacccacaacaacaacaatgtcGTCGTATCTACTTTCAAATACGACACCGTCAAGCAGGTGTTGTATCTGAAAGATTTGAATCTGATTCTGGGTCAGAACTACACAGTGCGATGGGACCAGGTCAGTGATCCAACGCCAGAGACCCAGCGCTTTGACTGCTACCCAGAGCCCAACAGTGACCCGACCAAGTGTAGGGCCAGGGGCTGCATCTGGGGGACGTCTACCACTGAGGGCGTCCCGTGGTGTTACTACCCTGAAGACTATGGTTACACCGCTACCACGGTGATAGAGCAACCTTCTGGCTGGAGCTTCAACATCACGCGGAACGCTGGGCTCCGGAGCAGCGGGAGACCAGAATCTCCAGACATAAACTCTCTCAGAGTGGAGATCAAATACCACACTGCGGACCTACTGCAGTTTAAGatcTATGACCCTACAAATAAGCGATTTGAGGTTCCTGTCCCCCTTAATGTCCCCTCCACcccagagacagatgagaccaagAGACTTTATATCGTCCAGGTCAAAAAACAGCCTTTTGGTATCCAGGTCATCAGAAAGAGCACTGGCACATTAATaTGGGACTCGGCGTTGCCAGGCTTTACCTTCTCAAATCTGTTCATCCAGGTGTCAACACGTCTGTCTTCAGATTATGTCTATGGCTTTGGAGAGACAGAACACACCTCATACAAACACGATCTCAACTATCATACCTGGGGCATGTTCACAAAGGACCAGCCTCCTGGGTATAAGTTGAATGGCTATGGTGTGCATCCCTTTTATATGGGTCTAGAGACGACCGCCGATGCTCATGGTGTACTACTGCTGAACAGCAACGCTATGGATGTGACCTTCCAGCCGACCCCTGCCCTGACCTATCGTACCCTGGGGGGCATCCTGGACTTCTACATTGTGATGGGACCCACCCCAGAACTGGTGGTGGAGGAGTATACTGCCCTGATTGGACGTCCCGTGCTCCCTGCCTATTGGTCCCTTGGGTTCCAGCTCTGTCGCTATGGATACGCCAACGACACAGAGATAGCAGACCTCTACAGAGAAATGAGAGCAGCAGGAATACCCTACGATGTGCAGTATGCAGACATAGACTACATGGAGCGCCAGCTGGACTTTGTTCTGGACAGCCAGTTCCAGGGTCTACCAGCCCTGGTGGACCACATGAGAGGAGAGGGCATGAGATTCATCTTCATACTGGACCCTGCCATCGGTGCCAACGAGACAACGACATACACTGCCTTTGACCGTGGTGTAGAAGAAGACGTATTCATCAAATGGCCCAAGCAGCTCAGCAATGACATCGTCTGGGGGAAgGTATGGCCTGACTTCCCTGGTGTTGTAGTCAATGAGTCTGTAGACTGGGACACGCAAGTAGAGATCTATAGGTCCTATGCGGCATTCCCAGACTTCTTCATGAATCGTACAGCAACGTGGTGGCATAGGGAGATTTCAGATTTCTACAATAAAACCATGAAATTTGATGGACTCTGGATCGACATGAACGAACCATCCAGCTTTGTCCATGGAACCGTTGGAGAGAAGTGTCTGGGTCCCCCTGTCTACGACAACCCCCCATACATGCCACcccTGGAATCCAGCCACCGTGGTCTCAACCATAAGACTCTGTGCATGAACAGCCAACAGCACCTCAGTGATGGTACCCCGGTCAAACACTATGACGTACACAACCTGTATGGATGGTCTCACACCAAACCCACATACGACGCCTTGCTGAGTGTGACGGGCAAGCGAGGGATAGTGGTGACCAGGTCGACCTACCCCTCCAGTGGGAAGTGGGCTGGACACTGGCTGGGAGACAACAACTCCAGCTGGGATCAACTCTACAAGTCAatcatagGAATGATGGAGTTCAGTCTGTTTGGATTTTCTTATactgGAGCTGATATCTGTGGGTTCTTCAATCCTGCCGAGTTTGAGATGTGTCTTCGCTGGACTCAGCTTGGTGCCTTCTATCCTTACTCTCGCAACCACAACGGCAAGTTCAACCCGagaCAAGACCCTGTATCGTGGAATGCATCGTTTTCTGAGGCTTCTCGTGATGTGTTGAATATCCGCTACACTCTCCTTCCCTACCTCTACACACTCATGTTTTACGCCCACAGCGAAGGAAGTACAGTGGTCCGACCGTTGCTGCAtgaGTTTGTGAGCGACAGGAAGACGTGGGATATCCACAGACAGTTCCTGTGGGGCCCTGCTCTGCTCATCAGCCCGGTCCTGGATGAGGGGGCCAGAGAGGTACAGGGCTACATCCCAGACGACCTCTGGTATGACTTCCACACGGCCAAGGCTATTGAGGTGAAGGGCCAGATGATAACCATGCCTACACCTCTAGACCACATCAACCTCCACGTGAGAGGAGGATACATCCTGCCCTGGCAGAAACCAGAGAACAACACAcactacagTCGGAAGAATCCTCTGGGGCTGATCGTTGCCCTGAGCGACAATGGAACTGCACAAGGTTCCCTGTTCTGGGATGATGGGGAGGGGATCGatACGTATGCGAGTAAGCAGTACCTACACAACACTTTCATAGTTGCTTCGAACACCCTGACCTGCCATGTGATGGTCAATGGTCTGCTGGTGGCTGACAGGCTGACCCTGGGTGTGGTGAACGTGTGGGGGGTTGGCAGCGTTCCTGTCACAGAGGTCACCCTACGAGATGGACCAGGCTCAGTAAAACAGGTCACCTTTCAACACAACACCAGCACTAAGGTGCTGATTGCCGATGCCACTGATCTATCTTTCCGCGTGGACCAGAACTTCACGCTCATATGGAAAACAAACACCTAATCACATTCACATCAACACTGCACTGCCATACAATGTGTTATTtaaaacagtggtggaaaaagtacccaataaAAGTATTGATTCCTTAATTAAAAAAAGTTAAAGTGAAAGTCTctcagtaaaatactatttgaataaaggtttaaaattattttgttttatatataCTTAAGTtgaaaaagtaaatgtaattgctaaaatatacttaagtatcaaaagtaaaagtataaattatttTAAATTCCTTAACGCAAACCAACCGGCACcatttgtttttatttgaatgtatttttacggattggcacactccaacactccaacactccaacactccaacactccaacaccgcaacactccaacactccaacactccaacaccgcaacactcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2210355 lncRNA upstream 4271 41025305 ~ 41025520 (+) True G1932287
TU2210352 lncRNA upstream 8975 41020585 ~ 41020816 (+) True G1932284
TU2210345 lncRNA upstream 15748 41013334 ~ 41014043 (+) False G1932278
TU2210346 lncRNA upstream 15748 41013334 ~ 41014043 (+) True G1932278
TU2210321 lncRNA upstream 23149 41006288 ~ 41006642 (+) True G1932269
TU2210470 lncRNA downstream 4364 41129742 ~ 41130250 (+) True G1932392
TU2210472 lncRNA downstream 4992 41130370 ~ 41130739 (+) True G1932394
TU2210473 lncRNA downstream 5406 41130784 ~ 41131042 (+) True G1932395
TU2210474 lncRNA downstream 5714 41131092 ~ 41131373 (+) True G1932396
TU2210476 lncRNA downstream 6303 41131681 ~ 41131918 (+) True G1932398
XM_021581568.2 mRNA upstream 57412 40962442 ~ 40972379 (+) False LOC110503202
XM_021581569.2 mRNA upstream 57412 40962699 ~ 40972379 (+) True LOC110503202
XM_021581580.2 mRNA upstream 192290 40810178 ~ 40837501 (+) False LOC110503211
XM_036961741.1 mRNA upstream 192290 40812827 ~ 40837501 (+) True LOC110503211
XM_036961742.1 mRNA upstream 192359 40810178 ~ 40837432 (+) False LOC110503211
XM_036961569.1 mRNA downstream 141389 41266767 ~ 41267279 (+) True LOC118944044
XM_036961130.1 mRNA downstream 898104 42023482 ~ 42078730 (+) True LOC110512028
XM_036962013.1 mRNA downstream 1014691 42140069 ~ 42240339 (+) False LOC110503413
XM_036962012.1 mRNA downstream 1014691 42140069 ~ 42333457 (+) False LOC110503413
XM_036962011.1 mRNA downstream 1014691 42140069 ~ 42335470 (+) False LOC110503413
TU2209850 other upstream 467885 40561212 ~ 40561906 (+) True G1931869
TU2207278 other upstream 924259 40089400 ~ 40105532 (+) False G1929916
TU2207269 other upstream 951459 40076476 ~ 40078332 (+) True G1929909
TU2207252 other upstream 977441 40049364 ~ 40052350 (+) False G1929901
TU2207223 other upstream 1001274 40025935 ~ 40028517 (+) False G1929891
TU2210655 other downstream 204672 41330050 ~ 41338188 (+) True G1932564
TU2211289 other downstream 1169470 42294848 ~ 42335194 (+) False LOC110503413
TU2211428 other downstream 1235878 42361256 ~ 42365260 (+) True G1933231
TU2211452 other downstream 1264049 42389427 ~ 42390261 (+) True G1933255
TU2211839 other downstream 1370202 42495580 ~ 42500990 (+) True G1933563

Expression Profile