RNA id: XM_036961131.1


Basic Information

Item Value
RNA id XM_036961131.1
length 1448
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC118944009
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41988723 ~ 42023238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAAAACTACAACCGACAGCCAGTTTGGTGGCCAGCTGATTGGTGTTTACTCGGAAAACCCTCGTCCCCTTTGGCTAGCCAGTTTTGATCATGCAGAAAACTTTGaattagaaaataaaatacacGACTAGCTAGCCACGGCAACTGAGCCCTACTTCGCTATAAATAAGCAATCTACCACTTCTGTCTACTGTAAACAGGTCCTGCCCCCCAGCCTTCTCTGAAGCGATCTCTGCCCCTGTAGCAGCCttcacaccacacacagaaacacacgtacacacacgtacacacacgtacacacaggtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtggGCCTCTGGACGAGGATGACAATGGAAGAGATGAAGAATGAAGCGGAGATGACCTCGATGGTTTCCATGACACTCTACACTGTGATGTACCCCGTCTTCCACGAGTTGGAGAGAGTGAACCTGTCGGCCGCACAGACCCTGAGGGCAGCGTTTATAAAGGTAAGGACCCATACACCAAATCACTCTTCATGGGACAGGACAGCGTTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCGTTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCGTTTATAAAGGTAGGGAGgtggagggacagggacaggacagcATTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCGTTTATAAAGGTAAGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGGTCAGGGACAGGACAGCGTTTATAAAGGTAAGGAGGTGGAGGGACAGGACAGCATTTAAAGGTAGGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAAGGAGGTGGAGGGTCAGGGACAGGACAGCATTTATAAAGGTAAGGAGGTGGAGGGTCAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGAACAGGGACAGGACAGCATTTATAAAGGTAAGGAGGTGGAGGGTCAGGGACAGGACAGCATTTATATAGGtaaggagatggagggacaggACAGCATTTATAAAGGTAGGGAGGTGGAGGAACAGGGACAGGACAGCATTTATAAAGGTAAAGAGATACAGGGACAGGACAGCATTTATAAAGGTAAGGACTCATACACCAAATCACTCTTCATGGGAAAGGACAGGAGTTTATGAGAAACAGAATAGTCCTGAGGGGTATTTTAGGAAGCAggatgagatgtttctacaacttgattggagtccacctgtggtacattcaattgattagacatgatttggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2211544 lncRNA downstream 3374 41915223 ~ 42006904 (-) True G1933328
TU2211559 lncRNA downstream 27838 41980016 ~ 41982440 (-) True G1933338
TU2211548 lncRNA downstream 89020 41919459 ~ 41921258 (-) True G1933329
TU2211463 lncRNA downstream 233515 41776399 ~ 41776763 (-) True G1933266
TU2211473 lncRNA downstream 238360 41770045 ~ 41771918 (-) True G1933273
TU2211632 lncRNA upstream 42026 42065258 ~ 42099963 (-) True G1933397
TU2211653 lncRNA upstream 67333 42090565 ~ 42170024 (-) True LOC110489558
TU2211600 lncRNA upstream 70778 42094010 ~ 42096053 (-) True G1933370
TU2211665 lncRNA upstream 91997 42115229 ~ 42115565 (-) True G1933419
TU2211678 lncRNA upstream 115442 42138674 ~ 42139771 (-) True G1933427
XM_036961521.1 mRNA downstream 144731 41776956 ~ 41865547 (-) False zbbx
XM_036961523.1 mRNA downstream 144731 41776956 ~ 41865547 (-) True zbbx
XM_036961570.1 mRNA downstream 634570 41362542 ~ 41375708 (-) True LOC118944045
XM_036961568.1 mRNA downstream 1629798 40370210 ~ 40380480 (-) False LOC118944043
XM_036961991.1 mRNA downstream 1888373 40027973 ~ 40121905 (-) False LOC110503403
XM_036961140.1 mRNA upstream 67351 42090583 ~ 42110645 (-) False LOC110489558
XM_036961135.1 mRNA upstream 67351 42090583 ~ 42110649 (-) False LOC110489558
XM_036961138.1 mRNA upstream 67351 42090583 ~ 42110650 (-) False LOC110489558
XM_036961137.1 mRNA upstream 67351 42090583 ~ 42110651 (-) False LOC110489558
XM_036961139.1 mRNA upstream 67351 42090583 ~ 42110652 (-) False LOC110489558
TU2211565 other downstream 6850 41988837 ~ 42003428 (-) True LOC118944009
TU2210500 other downstream 853545 41156371 ~ 41156733 (-) True G1932422
TU2209757 other downstream 1544411 40465620 ~ 40465867 (-) True G1931785
TU2208958 other downstream 2659639 39331834 ~ 39350639 (-) True G1931133
TU2208702 other downstream 2923275 39085575 ~ 39087003 (-) True dhx34
TU2211644 other upstream 49895 42073127 ~ 42075939 (-) True G1933401
TU2211802 other upstream 376665 42399897 ~ 42400327 (-) True G1933529
TU2212458 other upstream 1096733 43119965 ~ 43153967 (-) True G1934061
TU2212512 other upstream 1176141 43199373 ~ 43199815 (-) True G1934102
TU2214020 other upstream 2234064 44257296 ~ 44258661 (-) True G1935283

Expression Profile