RNA id: TU2211565


Basic Information

Item Value
RNA id TU2211565
length 2288
RNA type TUCP
GC content 0.48
exon number 5
gene id LOC118944009
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41988723 ~ 42023238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATTAGCAGAGCCTGATGCTGTGTACTCTGGTTGATTAGCAGAGCCTGATGCTGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGCGGTTGATTAGCAGAGCCTGATGCTGTGTGTTTTGTGGTTGATTAGCAGAGCCTGGTGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGCGGTTGATTAGCAGAGCCTGATGCTGTGTGTTTTGTGGTTGATTAGCAGAGCCTGATGCTGTGTGTTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTGTTCTGCGGTTGATTAGCAGAGCCTGGTGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTGTTTTGTGGTTGATTAGCAGAGCCTGATGCTGTGTGTTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTACTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTCTCTGTGGTTGATTAGCAGAGCctggtgatgtgtgttttgtggtTGATTAGCAGAGCCTGGTGATGTGTGTTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTCTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTGTTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTGTTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTCTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTGTTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTGTTCTGCGGTTGATTAGCAGAGCCTGATGCTGTGTGTTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTGTTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTGTTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTGTTCTGCGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGGTTGATTAGCAGAGCCTGGTGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTACTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTACTCTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGTCAGGCTGAGAAGGAGAACCCAGGGCTGACCCAGGACATCATCATGAAGATCCTGGAGAAGAAAGGCGTGGAGGTCAACTTCATCGAGTCACTACTACGCATGGCTGCAGGCGACGTggaagagttcaTGATTGACAGGCCTGAGCAGGAGTTCCAGGACTTGAATGACAAGGCCCGGGCACTCAAACACATCCTCAGCAAGATCCCGGATGAAATCAACGACAGAAGATATCGCCAGTGCCATAAAGGAACTCCTGGACATGGTCAACACTGTCTTCCGAAAATACCAGTACCAGAACCGAcggGCACTGgaacaccaaaagaaagagtTTGTGAAATACTCCAAGAGCTTCAGCGACACACTTAAAACCTACTTCAAAGATGGAAAGGCGATAAACGTGTTTGTCAGCGCGAACAGGCTCATCCACCAAACCAACCTAATACTGCAGACCTTCAAGACCGTGACATAGACTGGGGTTAACCACACCAACCCAGGCTTTTATCAGAGGACAGGAAACCCTTTATGTGTACAATGTTCAGATTCTGTTTCTGGGACTGTATCATTTATAAGTCTTGCTTCAAGAGGGAGATAATTTAGAGTTGCAGGCGGCCAGATTATAATTAAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2211559 lncRNA downstream 6397 41980016 ~ 41982440 (-) True G1933338
TU2211548 lncRNA downstream 67579 41919459 ~ 41921258 (-) True G1933329
TU2211463 lncRNA downstream 212074 41776399 ~ 41776763 (-) True G1933266
TU2211473 lncRNA downstream 216919 41770045 ~ 41771918 (-) True G1933273
TU2211471 lncRNA downstream 223873 41764750 ~ 41764964 (-) True G1933271
TU2211632 lncRNA upstream 61830 42065258 ~ 42099963 (-) True G1933397
TU2211653 lncRNA upstream 87137 42090565 ~ 42170024 (-) True LOC110489558
TU2211600 lncRNA upstream 90582 42094010 ~ 42096053 (-) True G1933370
TU2211665 lncRNA upstream 111801 42115229 ~ 42115565 (-) True G1933419
TU2211678 lncRNA upstream 135246 42138674 ~ 42139771 (-) True G1933427
XM_036961521.1 mRNA downstream 123290 41776956 ~ 41865547 (-) False zbbx
XM_036961523.1 mRNA downstream 123290 41776956 ~ 41865547 (-) True zbbx
XM_036961570.1 mRNA downstream 613129 41362542 ~ 41375708 (-) True LOC118944045
XM_036961568.1 mRNA downstream 1608357 40370210 ~ 40380480 (-) False LOC118944043
XM_036961991.1 mRNA downstream 1866932 40027973 ~ 40121905 (-) False LOC110503403
XM_036961131.1 mRNA upstream 6850 42010278 ~ 42023232 (-) False LOC118944009
XM_036961132.1 mRNA upstream 6850 42010278 ~ 42023238 (-) False LOC118944009
XM_036961140.1 mRNA upstream 87155 42090583 ~ 42110645 (-) False LOC110489558
XM_036961135.1 mRNA upstream 87155 42090583 ~ 42110649 (-) False LOC110489558
XM_036961138.1 mRNA upstream 87155 42090583 ~ 42110650 (-) False LOC110489558
TU2210500 other downstream 832104 41156371 ~ 41156733 (-) True G1932422
TU2209757 other downstream 1522970 40465620 ~ 40465867 (-) True G1931785
TU2208958 other downstream 2638198 39331834 ~ 39350639 (-) True G1931133
TU2208702 other downstream 2901834 39085575 ~ 39087003 (-) True dhx34
TU2208705 other downstream 2913704 39074316 ~ 39075133 (-) False dhx34
TU2211644 other upstream 69699 42073127 ~ 42075939 (-) True G1933401
TU2211802 other upstream 396469 42399897 ~ 42400327 (-) True G1933529
TU2212458 other upstream 1116537 43119965 ~ 43153967 (-) True G1934061
TU2212512 other upstream 1195945 43199373 ~ 43199815 (-) True G1934102
TU2214020 other upstream 2253868 44257296 ~ 44258661 (-) True G1935283

Expression Profile