RNA id: TCONS_00057599


Basic Information

Item Value
RNA id TCONS_00057599
length 504
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_027087
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7545660 ~ 7595697 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGTGTAATACACAAACTTCACCACATGATGGGGATCAGAAAAGTTTCTCTGTTTCAATCAATGGAAAAACAAGCATCAATAGTGTAATTCACACAACTCACCACATGATGGCGATCTGAAAAGATCCTCCATATCAGTCAATGGAAAAACATCGGCAGTGTAATTCAAATAATTCAACACAGGAGGGCAGCAAACAGGCTCAGTTTTGTCTCCGCTCCACTAGACGGGGGAAGAGGGTttcaatgacaacaacaacaacaacaacaacaacatggggCTCGATGACAGACGCAACAACACGTGCAGATTGTTTTTAATACAGTTCCTGCAAATGACAGCTATCAAAATCACTCATAACATGCAGTGGATGCAAAGACAATGCAGCTGTCAAGCACCACCGgatcagtgaagtgttgtggactgtaagtctgttgaacagaagcagagacgagtggacagacactgactgtactgatgatgatcatctgctgctgcacaggtga

Function

GO:

id name namespace
GO:0060359 response to ammonium ion biological_process
GO:0061959 response to (R)-carnitine biological_process
GO:0033273 response to vitamin biological_process
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053391 lncRNA upstream 39190 7415280 ~ 7506470 (+) False XLOC_027085
TCONS_00053387 lncRNA upstream 139401 7391354 ~ 7406259 (+) False XLOC_027084
TCONS_00053389 lncRNA upstream 142895 7391490 ~ 7402765 (+) True XLOC_027084
TCONS_00053388 lncRNA upstream 148635 7391462 ~ 7397025 (+) False XLOC_027084
TCONS_00057598 lncRNA upstream 433638 7111729 ~ 7112022 (+) True XLOC_027082
TCONS_00057608 lncRNA downstream 7248 7561869 ~ 7583552 (+) False XLOC_027087
TCONS_00057609 lncRNA downstream 37577 7592198 ~ 7595697 (+) True XLOC_027087
TCONS_00057610 lncRNA downstream 97953 7652574 ~ 7666746 (+) True XLOC_027088
TCONS_00057611 lncRNA downstream 160980 7715601 ~ 7717659 (+) True XLOC_027090
TCONS_00053409 lncRNA downstream 321615 7876236 ~ 7879970 (+) False XLOC_027095
TCONS_00053396 mRNA upstream 973 7508337 ~ 7544687 (+) False XLOC_027086
TCONS_00053394 mRNA upstream 1089 7508323 ~ 7544571 (+) False XLOC_027086
TCONS_00053395 mRNA upstream 1289 7508332 ~ 7544371 (+) False XLOC_027086
TCONS_00053393 mRNA upstream 1693 7508317 ~ 7543967 (+) False XLOC_027086
TCONS_00053400 mRNA upstream 1716 7514687 ~ 7543944 (+) False XLOC_027086
TCONS_00053402 mRNA downstream 122697 7677318 ~ 7713665 (+) False XLOC_027089
TCONS_00053403 mRNA downstream 144241 7698862 ~ 7713091 (+) True XLOC_027089
TCONS_00053404 mRNA downstream 263375 7817996 ~ 7821466 (+) True XLOC_027091
TCONS_00053405 mRNA downstream 268152 7822773 ~ 7826304 (+) True XLOC_027092
TCONS_00053406 mRNA downstream 272640 7827261 ~ 7836413 (+) True XLOC_027093
TCONS_00053390 other upstream 130223 7415337 ~ 7415437 (+) True XLOC_027085
TCONS_00053383 other upstream 381786 7163758 ~ 7163874 (+) True XLOC_027083
TCONS_00053382 other upstream 520377 7025167 ~ 7025283 (+) True XLOC_027081
TCONS_00053381 other upstream 630809 6914716 ~ 6914851 (+) True XLOC_027079
TCONS_00053350 other upstream 1760789 5778229 ~ 5784871 (+) True XLOC_027061
TCONS_00053415 other downstream 579973 8134594 ~ 8134710 (+) True XLOC_027099
TCONS_00053421 other downstream 949066 8503687 ~ 8503801 (+) True XLOC_027102
TCONS_00053451 other downstream 2037910 9592531 ~ 9598700 (+) True XLOC_027123
TCONS_00053480 other downstream 3152134 10706755 ~ 10713584 (+) False XLOC_027140
TCONS_00053484 other downstream 3198119 10752740 ~ 10763285 (+) False XLOC_027142