RNA id: XM_036961060.1


Basic Information

Item Value
RNA id XM_036961060.1
length 2402
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC118943990
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 44326788 ~ 44898432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGATACATTGTGCCAGTTCAGGTTGTGGCGTCTTTGTGGGAAAATCCGCATACCGGGATTGCAGGCTATTTCATGAAAAGAGCTTTGGTTATTTAATGACAAGTATTGATCGAATGAACTACCGGATAAAAGTCAGCTCTTTCTACTGAGTCAACTGAGGGAGAAAAAAAGAACTATATCTCCTGATTCCATTGCCGGGAGAAAGAGGGAACTTCGGCTATTGTTTCGTTCAAAACAAGTAAAGAAGATCGTTGCAGAACTGCCCTCTATTGGATATCATCTGCAGCTAAGGACGCAAATAATTCAGAACAACTATCCGTTGTATTTTCTGGAACTTGTCATTGAGACGTCGAGCACCTCCCGCCCCCTCGCCTCTATTCCAGAATACTAGAGGGGGGGTAGGCAGTGGCGAACTGCAGCACTGGGTGAAACACGGGATTCAAGGTAGACGGAGGATAGCCTGCTGCCTGATTTCACCACAATATAAACCTCTATTTGGACGATTTATATTCCCCCGTTCAGTCACCTAACTCCGATAAGAACGTATCGTCTCGGTTGTTCGGTTGTGCGTAAATTGCGCCGTGGATATCTTTCCAGCTCGCGGGAGATCAACTCATCAGTCTACCGTTCACCGTTTCGAGTTGCGTAGTTCAGAGCTACTGAACGTAGGGATAGATAACTAGTCAGTCAAGTCGGCTCGCATTAATTCATTAGTTTGAAAGTAGTTCCACATCGACTCCGGGTCTCAAGGTAACGGCGTATTCCCAACCAACGGACGGACTGGAATTTGCGCTCGAGTTGCATGCCTGGTCTAAATCATCTGGACTGAACATATTCCATCCACTCAGGGGAAGCTATCACAGAGGTCCGGAGAGTTGGAAGCGCCATGGCGATGTTGGCGACTGTTTGGATAGTCCTTCTGGCTGTCAATATACAAGctGGAGATGGACAGAGTGTCCAGATGGACTCCATTAAGTCAGGCTTCGTGGGCTCCCAGGTGGAGCTGCGGTGTATCTTCGTTAATTCCAACCCTCCAGTCAAGATCTCTCAGGTGACGTGGCAGAAGTTCCTGAACGGCACCAAACAGAACGTGGCCATCGCCAACCCGTCGCTGGGGGTGTCCGTGCTCCCGCCCTTCAAGGAGAGGGTGACCTTCAAGCAGGCTGCGGTCCGCCACCGCACCCCGTCTCTGGAGGATACCACCATCATGTTCTCCAACCTGAGGCTGTCTGATGAGGCCGCATACATCTGCGAGTACACCACCTTCCCTGCTGGGAACCGAGAGAACATGGtcaacctcaccgtgtttgcgCGACCTCTGACCCGAATGACCTTGACCACGCCTACCATCGTGGCCCGCCCCCAGAAGCGTAAGATGACTGTGGCAACATGCCTCTCGGCCAATGGGAAGCCTCAGAGCGTGATCAAGTGGGACACGAGGCTGAAGGGTGAGGCCACGTTCCAGGAGACGCAGAACAGCAACGGCACGGTGACCGTCCGCAGTAACTATGTGGTCGTGCcaagcagagagacacacaaacagaaacTCACCTGCATCGTAACCTACCGCAACGAGAGGATTACCGACAGTGTCGTGCTCAACGTGCAGTATGAACCGGAGGTGAAGATCGAGGGTTTTGATGGTAACTGGTACCTGAACCGTCAGGACGTCAGCCTCACCTGCAACACTGACGCTAACCCCCCTGTCACCGTCTACCAGTGGAAACTGTTGAATGGATCTCTTCCCAGCACCGTGGAGATTCGTAACAACTCTCTAATCTTCAAGGGGGCGGTGACCTACGAGCTAGCTGGAACATACGTGTGTGATGCCACCAATGGGATCGGGACTCGTACAGGTCTGGTCGAGGTTAACGTCACTGagAAGCCGATGGCCCGGGGTCCTCCTGGAGGAATATTGGGGGTGTTGGGAGGGGTCGTAGCCGCTGGTCTCATCATCGCCGTGGCTGTCACAGTCTTCATGGTTTACCGCCGGCAGCAGAAGACTCGCACCGAGACTGACAATGACCTGACCGACCTCCCGCCCGCCCACAAGCCGGCCCCTCCCCCGCCCAAAAAGAAGAGCAGCGATTTGAAGGGCCACTTGACATCCGATGACATCCAGGTGGTTCATCTGGACAAGGGCGAGGACATGCAGAAGCTTCCTCTCCAGCCTCCCTACTACGATATGGCGCCCTCCGAGTCAACCCCTTTCACTGACAAGCCGAACTCTGACCACAAGGACTGTGATGTCCAGTATGCGGAGCTGGATACTGCGGCTCTGGCCTCCTCTCCCAGCCCACGAAGCTCAGTTCAAACTGCCGGGGACCTTGTCGAGTATGCAACCATCCAGTCTAGCTCACACTAGCGCATGCCATTATAGGCCTTTTCCCTCCGACTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2214002 lncRNA downstream 20332 44314706 ~ 44341827 (-) True G1935271
TU2214003 lncRNA downstream 41755 44314500 ~ 44320404 (-) False G1935271
TU2214001 lncRNA downstream 41755 44314706 ~ 44320404 (-) False G1935271
TU2214049 lncRNA downstream 51612 44310061 ~ 44310547 (-) True G1935310
TU2214046 lncRNA downstream 54684 44307257 ~ 44307475 (-) True G1935307
TU2214437 lncRNA upstream 49861 44948293 ~ 44948535 (-) True G1935619
TU2214438 lncRNA upstream 50345 44948777 ~ 44949155 (-) True G1935620
TU2214444 lncRNA upstream 60041 44958473 ~ 44958830 (-) True G1935625
TU2214451 lncRNA upstream 67445 44965877 ~ 44966241 (-) True G1935632
TU2214457 lncRNA upstream 87916 44986348 ~ 44986557 (-) True G1935638
LOC118944048 mRNA downstream 707452 43652793 ~ 43654707 (-) True LOC118944048
XM_036961572.1 mRNA downstream 711850 43649406 ~ 43650309 (-) True LOC118944047
XM_036961571.1 mRNA downstream 857509 43502301 ~ 43504650 (-) True LOC118944046
XM_036962030.1 mRNA downstream 922880 43434126 ~ 43439279 (-) False LOC110503290
XM_036961713.1 mRNA upstream 402882 45301314 ~ 45370352 (-) False LOC110503298
XR_005039359.1 mRNA upstream 402882 45301314 ~ 45370352 (-) False LOC110503298
XR_005039362.1 mRNA upstream 435689 45334121 ~ 45336972 (-) False LOC118944063
XR_005039364.1 mRNA upstream 435689 45334121 ~ 45336972 (-) False LOC118944063
XR_005039360.1 mRNA upstream 435690 45334122 ~ 45336972 (-) False LOC118944063
TU2214020 other downstream 103498 44257296 ~ 44258661 (-) True G1935283
TU2212512 other downstream 1162344 43199373 ~ 43199815 (-) True G1934102
TU2212458 other downstream 1208192 43119965 ~ 43153967 (-) True G1934061
TU2211802 other downstream 1961832 42399897 ~ 42400327 (-) True G1933529
TU2211644 other downstream 2286220 42073127 ~ 42075939 (-) True G1933401
TU2214897 other upstream 497600 45396032 ~ 45397761 (-) False G1935978
TU2214898 other upstream 497600 45396032 ~ 45397761 (-) True G1935978

Expression Profile