RNA id: XR_005039359.1


Basic Information

Item Value
RNA id XR_005039359.1
length 4479
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110503298
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45301314 ~ 45370352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTCAAATCTAAATCACAGTCGTAAGAATAGTTGATGAAACGTTGCTGTAGAGAAAGTTCTCCCCACTAGAGAAGAGGGATGTGGTCTCTGTAAAGGCTCTCTGTCCCAGTGAATGATCCCAAGCCCTGCCCATTCCGAGGTTCAGATCACATGAGTCAGAGTCGGATGTCCTGCCTGGAGTGTAGAACCAAGTCAGCTTCAACTTTACAACAGTGAGAAGGCAATGATTTACAATGCGCGCTGTCACTCCTGTTTCATGGCAAAATCGGTAAACTCTCGAAAGTTAATCTGTGCAGTTATTTGAGTTTCGCTCAAGATACGTTTTTAGCTGTTCTCTTTGTGTTTCTTTTTGGAAAAGTTACAGATACAGTTGGGTAGATATGCACGTTGTTATATTAGCTAGTGTGTCTTTCCGAAACAGCAGAAAGAAGAGTACACTTTTCGGAGATTACAATAGTTAGCACGTATATTAGCACGCCATATTGTTGGGAGAAAATACATTCACAATAAATTAACAACCTCATCGAATTTACTTTTGGAAGAATTTACTTTTGGAAGTTGGATGATTTGAGGTTTCAAGTTTCGTTCTGAAGAAAACTTTGCATTGATTTTGGCTCTTTGAATCTTTTCTATACATTTTTTTCTCGAGCAAAtacgttttgtattgtttttggAATAACCATGGATCCCAGCCAGCACAACCCTCCAGCCGGTCACCAGATAGTCCATGTCCGGGGAGACTCGGAGACTGATCTGGAGGCCCTTTTCAACGCTGTTATGAACCCGAAAAACACAATCGTCCCTGCCTCCGTCCCCATGAGGATGAGAAAGCTACCCGATTCCTTCTTCAAACCGCCTGAGCCAAAGTCCCACTCCAGACAAGCTAGCACAGATGCAGTTACGGCTGGTGCCCTCGCCCCCCACCATGTGCGTGCCCACTCATCTCCGGCCTCTCTACAGCTAGGGGCAGTGTCACCCCTGTTGGGCATGGTCCCAGCGGGCGCGCCTCCATCAAACCTCCGACAGTCGTCCTATGAGATCCCAGATGACATGCCCCTGCCCCCAGGTTGGGAGGTGGCTCAGACCCCCTCTGGACAGAGATACTTCCTCAACCACCTGGACCAGTCGACCACCTGGCTGGACCCTCGTAAGGCCCTCCTACAGATGAACCAGGCCCCTCCCACCAGCCCTGTACCAGTCCAGCAGCAGAACATCATGAGCCCAGCTAGTGGTCCTCTCCCTGACGGCTGGGAACAGGCCGGCACCTCTGAGGGAGAGATCTACTACATCAACCACAAGAACAAAACCACCTCCTGGCTCGACCCACGCCTGGAGCCGTGCTACAGCCTGAACCAGCAGCGTATCACCCAGAGTGCTCCTGGTAAGCAGGGGAGCCAGCTGCCTTCCAGCCCCCAAAGTGGAGGAGTCATGGGGGGCAGCAACCAGATAAAGCTCCAGCAGCtgcagatggagaaggagaggttgAGACTGAAACACCAGGAGCTGCTCCGCACCAGACCACAGGAGCTTGCTCTGAGGAACCAACTGCCCACCAGTATGGAGCAGGATGGGGGAACCCTTAACCCCGTGTCGTCCCCTGGGATGGGCCAGGACGCCCGAATCATGACCACCAACAGCAATGACCCATTCCTCAACAGTGGGACCTACCACTCCAGGGATGAGAGCACAGACAGTGGTCTGAGTATGAGCAGCTACAGTGTCCCCCGTACCCCCGACGACTTCCTCAACAGTGTGGACAGTGTCCCCCGTACCCCCGACGACTTCCTCAACAGTTTGGACAGTGTCCCCCGAACCCCTGATGACTTTCTCAACGGTGTGGACGAGATGGACACAGGGGACTCCCTGCCGGTCTCCATGGGAACACAGGCCAGTCGTTTCCCTGACTACTTGGACGTCATCCCGGGGACAGATGTAGACCTTGGCACGCTGGAGAACAAGAGCATGGCCGTGGAGGGGGAAGAGCTAATGCCTAGTCTCCAGGAAGCCTTGAGCTCCGACATCCTAAACGACATGGAGTCAGTTCTGGCAGCCACCAAGATGGACAAGGAGAACTTCCTCACATGGTTATAGACCAAGCCGGACCTGGGCCTGCTCACTGATAAGCTATAGTATACAACATCGGTTTACAAACTTTTTTTTGCTACTTGACCCACCAATTGAGGTGGGTGTTTAGTCATGACCCACCAATTGAGGTGGGTGTTTAGTCATGACCCACCACACGATTTGAGCAGTGGAACAACATGCTCTGACCCGCAGGtatataggagagaggagaggagcctggGATTAGCTACAATGGGCTCTATAGGAGAGACACTGCTCTTCACTCCTATAGTCCACACGTTTACCTGCTGCCTAGTCAAACTCTCAGACCAGTGAACGATGTGTAGTTGCCTTGATTAAAATATTTTCCTCCTTCCTGGATATGAATGATATCTGTCATCGGGCAGCATACATGTTAACATGGCCGACTGAGGCACTGCTATTCTGTTGTTTCTATATCTTTCTTTTTGTTGTCTGTGTCTTCAAGGCTGGCCTGTGAACACACAATTTATTCAAAGGTCCCTGAATCTTTTCACACGGCTGGCATTCTCAATCTGTCCATCATCTTTACCTGGTTGTTTCTCTACCACACCTTTACATCTAGGGTGTCTTACCTGCTGGCCGGCCGGCAAGGCAAGGGGCCTGCTGCTCTCCTTATCCCCCAACCCCCACATCTGATCTGGGTGGCTGCCTGCCTGTACTCCTCTCACCTCGGCCCCAGGCTTCCTGACAATAGCATTCAAGCATTGTATTATCCTGCCTTTTTTTCTTTTAATTCATGTATTTTACATTGTTGTTTTAAATAGTTTTTGTTTTTAATGATGAGCCGGAGAAAACCCAAAATGATATATCTGAagttgtgtcaagaactgtattGATTTGGAAGGTTAGTTTAGGTACGTTAGGTTAGGGCTTCGCCCCAAATGGCACATATTCCTgacatagtacactactatggCCCCtggtagtagtgcactagataaggtatagggtgctatttgggacataaCCTGGTTTACACAAGCTGGAGTCCCAGTTAGGACATGTTAGCTCTGTGTGGTGGTGATGGGGCTATTGCCTGGAGCCTGGGCCGGGGACCTCGCATACTatactcagtggtggaaaaagtacccaattgttatacttgaataaaaagtaaagataccttaatagaaaatgtctcaagtaaaagtgcaagtcacccagtaaaatactacctgagtaaaagtctaaaagtgtttgtttttaaattaactttagtatcaaaagtaaaagtataaatcacttAAAATTCCTTACATTAAACAAACCAGACctcaccattttcttgttttttaatttacagatagccaggggtacacgccaacataatttacaaaagatgcatgcatgtgtgtttacTGAGTccgccaaatcagaggcagtaggaatgaccagggatgttctcttgataagtttgTGAATTAGACTATTTTCCTGCCCTGCTAAGAATTCAAAATGTAAGGAgtgcttttgggtgtcagggaaaatgtatggattcaaaattacattattttatttaggaatgtagtgaagtacaaTTATAAGTTGTCAAAAAAGTAaataataaagtacagataccccaaaaaacgacttaagtagtactttaaagtatttttacttaagtactatACACCACTGGCTATACTATACAATATGATACATACGTACTGCTGCTTGGCTGTGCCAGCATGTTTATACGTTTTTGTCAAATCAAAGTGCCTTCAGTTGTATTTTTTGAGAGAAGAAGAGCAAGAAAATCTACACCAAGTAATAATACTAAATAATGTGTCTAAGAAGTTGTATTATTGCCAAACAAACATCAAAAATACTCTCCTCTACTTACGTTAATGTCCAATAATCAACAGTATGTTTCTGTTTTTCTAAAAACGTGTTATTATTATGGGACTtcagtaacactttacttgacacccttGACACGATCaaaaccatgtcataatatgtcttAACAGCTACCATAACCATACCATAACCTGTCATAACACTatcatgacccatatatttacacctgttgtgacatattgtgttatttcatggcTGGTTATGAACCCTATATGCTGtaagtttgttgttgttgttgttgttgttgtaatgaattgTTAACAGtcatcatattttaaataacttgtagAAAATACTCTTTATAACACTGTCAAGAAGCTTTATGACATCATAATCAGATAGGCTTTTCACGTACATCCCCTTATTTCAGTCATTAGTCAAAAAGatggtgtcttgtcctgctcctgtcctcctgtgtcttgtcctgctcctgtcctcctgtgtcttgtcttgtcctgctcctgtcctcctgtgtcttgtcttgtcctgctcctgtcctcctgtgtcttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2214841 lncRNA downstream 2448 45296606 ~ 45298866 (-) True G1935935
TU2214787 lncRNA downstream 16877 45284196 ~ 45284437 (-) True G1935890
TU2214780 lncRNA downstream 22349 45278678 ~ 45278965 (-) True G1935883
TU2214767 lncRNA downstream 32505 45268596 ~ 45268809 (-) True G1935872
TU2214742 lncRNA downstream 46504 45253906 ~ 45254810 (-) True G1935859
TU2214892 lncRNA upstream 20917 45391269 ~ 45391501 (-) True G1935974
TU2214909 lncRNA upstream 33459 45403811 ~ 45404056 (-) True G1935986
TU2215025 lncRNA upstream 143589 45513941 ~ 45514543 (-) True G1936087
TU2215043 lncRNA upstream 158956 45529308 ~ 45529593 (-) True G1936105
TU2215294 lncRNA upstream 191534 45561886 ~ 45562126 (-) True G1936311
XM_036961057.1 mRNA downstream 402882 44326788 ~ 44898432 (-) False LOC118943990
XM_036961060.1 mRNA downstream 402882 44362159 ~ 44898432 (-) False LOC118943990
XM_036961059.1 mRNA downstream 402882 44602629 ~ 44898432 (-) True LOC118943990
XM_036961061.1 mRNA downstream 705670 44593457 ~ 44595644 (-) True LOC118943991
LOC118944048 mRNA downstream 1646607 43652793 ~ 43654707 (-) True LOC118944048
XM_036961468.1 mRNA upstream 200726 45571078 ~ 45883165 (-) True LOC110503441
TU2214215 other downstream 715922 44579022 ~ 44585392 (-) False G1935467
TU2214166 other downstream 779875 44521155 ~ 44521439 (-) True G1935421
TU2214020 other downstream 1042653 44257296 ~ 44258661 (-) True G1935283
TU2212512 other downstream 2101499 43199373 ~ 43199815 (-) True G1934102
TU2212458 other downstream 2147347 43119965 ~ 43153967 (-) True G1934061
TU2214897 other upstream 25680 45396032 ~ 45397761 (-) False G1935978
TU2214898 other upstream 25680 45396032 ~ 45397761 (-) True G1935978

Expression Profile