Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00053414 |
| length | 1614 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 9 |
| gene id | XLOC_027097 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 8016457 ~ 8027318 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006914 | autophagy | biological_process |
| GO:0042742 | defense response to bacterium | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0043122 | regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
| GO:0034067 | protein localization to Golgi apparatus | biological_process |
| GO:0090161 | Golgi ribbon formation | biological_process |
| GO:0007409 | axonogenesis | biological_process |
| GO:0051648 | vesicle localization | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0005768 | endosome | cellular_component |
| GO:0005776 | autophagosome | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0055037 | recycling endosome | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0070530 | K63-linked polyubiquitin modification-dependent protein binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| id | description |
|---|---|
| ko04137 | Mitophagy - animal |
| ko05014 | Amyotrophic lateral sclerosis |
| ko05022 | Pathways of neurodegeneration - multiple diseases |
| ko04131 | Membrane trafficking |
| id | description |
|---|---|
| ZDB-GENE-030131-8103 | Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity. Acts upstream of or within axonogenesis; defense response to bacterium; and vesicle localization. Predicted to be located in autophagosome; perinuclear region of cytoplasm; and recycling endosome. Predicted to be active in Golgi apparatus and nucleus. Is expressed in several structures, including eye; otic vesicle; periocular mesenchyme; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Paget's disease of bone; amyotrophic lateral sclerosis (multiple); and glaucoma (multiple). Orthologous to human OPTN (optineurin). |
| ensembl_id | ENSDART00000133616 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00053411 | lncRNA | upstream | 140316 | 7879259 ~ 7881317 (+) | True | XLOC_027095 |
| TCONS_00053409 | lncRNA | upstream | 141663 | 7876236 ~ 7879970 (+) | False | XLOC_027095 |
| TCONS_00057611 | lncRNA | upstream | 303974 | 7715601 ~ 7717659 (+) | True | XLOC_027090 |
| TCONS_00057610 | lncRNA | upstream | 354887 | 7652574 ~ 7666746 (+) | True | XLOC_027088 |
| TCONS_00057609 | lncRNA | upstream | 425936 | 7592198 ~ 7595697 (+) | True | XLOC_027087 |
| TCONS_00057612 | lncRNA | downstream | 18124 | 8045442 ~ 8049258 (+) | True | XLOC_027098 |
| TCONS_00057129 | lncRNA | downstream | 683301 | 8710619 ~ 8737886 (+) | True | XLOC_027104 |
| TCONS_00057130 | lncRNA | downstream | 688807 | 8716125 ~ 8726451 (+) | True | XLOC_027105 |
| TCONS_00057613 | lncRNA | downstream | 847247 | 8874565 ~ 8885723 (+) | True | XLOC_027107 |
| TCONS_00057614 | lncRNA | downstream | 1079941 | 9107259 ~ 9148954 (+) | True | XLOC_027111 |
| TCONS_00053412 | mRNA | upstream | 38617 | 7888047 ~ 7983016 (+) | True | XLOC_027096 |
| TCONS_00053410 | mRNA | upstream | 137902 | 7876263 ~ 7883731 (+) | False | XLOC_027095 |
| TCONS_00053408 | mRNA | upstream | 137941 | 7876197 ~ 7883692 (+) | False | XLOC_027095 |
| TCONS_00053407 | mRNA | upstream | 171144 | 7841627 ~ 7850489 (+) | True | XLOC_027094 |
| TCONS_00053406 | mRNA | upstream | 185220 | 7827261 ~ 7836413 (+) | True | XLOC_027093 |
| TCONS_00053416 | mRNA | downstream | 141196 | 8168514 ~ 8208654 (+) | True | XLOC_027100 |
| TCONS_00053417 | mRNA | downstream | 185745 | 8213063 ~ 8515824 (+) | False | XLOC_027101 |
| TCONS_00053418 | mRNA | downstream | 185838 | 8213156 ~ 8263622 (+) | False | XLOC_027101 |
| TCONS_00053419 | mRNA | downstream | 349044 | 8376362 ~ 8478624 (+) | False | XLOC_027101 |
| TCONS_00053420 | mRNA | downstream | 349044 | 8376362 ~ 8515824 (+) | True | XLOC_027101 |
| TCONS_00053390 | other | upstream | 606196 | 7415337 ~ 7415437 (+) | True | XLOC_027085 |
| TCONS_00053383 | other | upstream | 857759 | 7163758 ~ 7163874 (+) | True | XLOC_027083 |
| TCONS_00053382 | other | upstream | 996350 | 7025167 ~ 7025283 (+) | True | XLOC_027081 |
| TCONS_00053381 | other | upstream | 1106782 | 6914716 ~ 6914851 (+) | True | XLOC_027079 |
| TCONS_00053350 | other | upstream | 2236762 | 5778229 ~ 5784871 (+) | True | XLOC_027061 |
| TCONS_00053415 | other | downstream | 107276 | 8134594 ~ 8134710 (+) | True | XLOC_027099 |
| TCONS_00053421 | other | downstream | 476369 | 8503687 ~ 8503801 (+) | True | XLOC_027102 |
| TCONS_00053451 | other | downstream | 1565213 | 9592531 ~ 9598700 (+) | True | XLOC_027123 |
| TCONS_00053480 | other | downstream | 2679437 | 10706755 ~ 10713584 (+) | False | XLOC_027140 |
| TCONS_00053484 | other | downstream | 2725422 | 10752740 ~ 10763285 (+) | False | XLOC_027142 |
