RNA id: TU2169170


Basic Information

Item Value
RNA id TU2169170
length 1972
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G1896363
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6371945 ~ 6374057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTATGACTTTCTGCTTCATTTATGTGGCACATCATGGAATTGCAGAGGAAAAACAAATGCTACCAAAGTGAAagacaaaaaagaaaaaaaagaagtgtGACAAGTATTAGACAAGACAGTAAACAGAGACACTTGAACACGCCTCTTCATCTGAGCTATTGGTGCAACAGGAAATACCGCTGAACTACGTTGTTGTCAGTGACAAATCAATCAAACCGGTTAACATTGCGACAGAAACCACTAAATACACAAACATGTGTTCAGAAAAAGCAAAGAGATAGACCTCTACCGACATTTGGTAGAATCACTCCACAATCAAGTTGCTTGTCCTTGTAACGAAGTTTGGGTAAAATGGTCATaacccataaaaaaaaaaaaaaaaagataaaacacAGGTACGTGAGGCACTGGGTTGTGATCTGGACGAAGACTTGAAAAAGAATGATCCAAAATGGCAGTAAGTTAGTCAGATGTAACTAAACATATGAATGATAAAATGTCTATCATTTATCTATAGATTTGCCATCGGATTCTTCGTCAACAATCATCACTACATTTGATACTGCGTGTGCAGTAGGCTTATTGATTCATTCAAGGTACAGAAAGCCAACCGTAGCGCAAAGCAGGAAGACTGAAAGAGAAATCTATAGAGGATATCAGAAACGTTTAGAGGCCAGccaacctggacagctgatgaaactgtggtttTGCACAACCGAATAATACAATTTCTGCAGAAACTATcggaaactgtctcagggaagctcatctgcgtgctcatcctaaaaaaaatctcaaatgcTCACTTTCGATGgccacactggagaagtgtgctcttcacagattaatcccGGTATTGTGTAGGCAAGAggcttgctgatgtcaacgttgtgaacagagtgccccatggtggcggtggggttacggtatgggcaggtataagctacggacaacaaacaaaAGAGCATTTTATCGATGCCAATTTGAGTGCACGGcaatggaggctggtgggagtagCTACAGGAGGACGGAcgcattgtaatggctggaatggaacggagtcaaacatgtggtttccatatatttgatttgttaaatacacagttccatttattccattccagccattactatgagcccaccagcctccacggatgcacagagataccgtgacgagatcctgaggcccattgtcgtgccattcatctgccgccatcacctcatgtttcagcatgataatacactgACCCATGTTGCGAGGACCTGTACacaaaatgtcccagttcttccatggcttgcattctcagacatgtcactcattgagcatgtttCGGATGCTCTGGATTCGATTTTGTttaacagcatgttccagttcctacCAATATCCAGCGACTTCGCACAGCTATTGaagcggagtgggacaacattccacaggccacaatcaacagcctgatcaactctttgcaaaggagatgtgttgtgctgcataaggcaaatggtggtcacaccagatactcacTGGTTTTCTGACCACACTACAAAAatgtttaaggtatctgtgacaaacagatgcatatctgtattcccagctatgtgaaatacatagattagggcctaatgattttatttaaattgacttgatttccttatatgaactgtaacgcagtaaaatctttgaaattgttgcatttatatttttgttcagtgtaatttaaTTAAATGGACTGCTCTACCAAATGCAACCGAACAACTGTATACATGGCTAGATTTACAATGTGTATCATCAACACATTGACAGTTTGGATATATGTTGTATATTCATCTTTTGAAAACAGAAGAATGACATTTGATGTGTCCTTGATGCTAAAAAAGAAAATGTCCATAAATGCGACAATAGGTGCCGTCACTAAACCACACATGCTCAGAAACACCAAAAGCGTCCATTGTTTGTCCACTCACTCATACATCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2169171 lncRNA upstream 1753 6370139 ~ 6370333 (+) True G1896364
TU2169204 lncRNA upstream 14600 6357271 ~ 6357486 (+) True G1896397
TU2168787 lncRNA upstream 308104 6063747 ~ 6063982 (+) True G1896003
TU2168780 lncRNA upstream 314549 6056644 ~ 6057537 (+) True G1895996
TU2168618 lncRNA upstream 365652 5875063 ~ 6006434 (+) True LOC110503581
TU2169210 lncRNA downstream 1768 6375825 ~ 6376095 (+) False G1896402
TU2169209 lncRNA downstream 1781 6375838 ~ 6376095 (+) True G1896402
TU2169211 lncRNA downstream 2221 6376278 ~ 6377223 (+) True G1896403
TU2169296 lncRNA downstream 109881 6483938 ~ 6484429 (+) True G1896473
TU2169299 lncRNA downstream 111690 6485747 ~ 6486102 (+) True G1896476
XM_021581995.2 mRNA upstream 2228 6363057 ~ 6369858 (+) True LOC110503588
XM_021581993.2 mRNA upstream 15589 6285718 ~ 6356497 (+) False LOC110503587
XM_021581994.2 mRNA upstream 15589 6285719 ~ 6356497 (+) True LOC110503587
XR_005039337.1 mRNA upstream 202293 6156840 ~ 6169793 (+) True LOC118944026
XR_002470495.2 mRNA upstream 228233 6142403 ~ 6143853 (+) True LOC110503584
XM_021581998.2 mRNA downstream 83753 6457810 ~ 6460870 (+) True LOC110503591
XM_021582000.2 mRNA downstream 87709 6461766 ~ 6463828 (+) True sertad3
XM_021582015.2 mRNA downstream 227923 6601980 ~ 6604021 (+) True LOC110503600
XR_002470496.2 mRNA downstream 421088 6795145 ~ 6818270 (+) False LOC110503605
XM_021582023.2 mRNA downstream 484979 6859036 ~ 6896546 (+) False LOC110503606
TU2168015 other upstream 849221 5521415 ~ 5522865 (+) True G1895266
TU2168012 other upstream 852054 5519021 ~ 5520032 (+) True bl1s3
TU2166742 other upstream 1927110 4444623 ~ 4444976 (+) True G1894083
TU2166691 other upstream 2030682 4336603 ~ 4341404 (+) False LOC118944093
TU2166174 other upstream 2081488 4289908 ~ 4290598 (+) True G1893604
TU2169780 other downstream 566359 6940416 ~ 6941556 (+) True G1896894
TU2169820 other downstream 643738 7017795 ~ 7018558 (+) True G1896931
TU2170012 other downstream 942895 7316952 ~ 7328311 (+) False LOC110503629
TU2170011 other downstream 949222 7323279 ~ 7328311 (+) True LOC110503629
TU2170319 other downstream 1702149 8076206 ~ 8079986 (+) True LOC118944073

Expression Profile