RNA id: TU2169594


Basic Information

Item Value
RNA id TU2169594
length 2874
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G1896720
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6596671 ~ 6599586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAAACCATTAAATgcacattttcaaaatgtattttttaatttagctaggcaagtcagttatgaacaaattcttatttacaatgacggcctacctcgggccaacactgggccaattgtgcgctgccctatgggactaccaatcactTGAGGATGAACATAGTGCTTTTGTAGGAAATTCATTTTTTGTTGTGAGGGCTACATTTGACTTACTGTAATTTTAGATAACTAAGAGGCCTAATTTTAGTACTACATACACTTTCAGATACAGCTACTAGTGTACAGTATACATTCATGCCAATGTGATCAGCAATGGCTTGATGTCTTGTCCTCATTCCATTTCATATTCACACATGCACATGGTAAGGTATTGATTGGCACCAGCTTTGCAAATTGATAATTCAATTAATATATAAAATTTTGGTGACGAACATAAAAGGTTAAGGAAAACCTGACAGAGAAGTATTTtgatatacatgtatatattatcTTTTAAACAATTCAAAGAGTTAAGTTCATTGGTAAAACAGAGCATAAAACAGGGATTTTATAGAACTTTTTAAAAAATAATCAAGAGGATCACGTGAAAAACTTGAATCTCAGTCAATATAGAAAAAAAACCTTTGACTTTACATAGAGTAAATTCCTTTAAATTAAACATCATAAAAGTACACAATATTAGTTTAATCTCTACACCCTCTACAACTTCAGTTAACAGATAACCTATAACTATCCTAACAAGAACCATTTCACCCACTATTTCCCTGGCACAtattgaaataataaagtcatttAACACTCAAATAGTAAGATTACAGAAAGTCTACaacccccttgaacttttttttcacattttgttacattacaaagttggattcactttttttttcttcaacaatctacacaaaatactgtaATATAATGTCAAagtacattatttaaaaaaatgttaagaCTAATTAAAAATCAAACACTAATATACCTTGATTGgttaagtattcacccccctgagtcaatacatgttagaatcacctttggcagcgattatgaGTCTCTTGAGTAAGTCTCAaaagagctttgcacacatgTATTGTggaatatttgcccattattcttttcaaaattcttccaagctctgtcaaggtgtttgggatcatggctagacagccattttcaagtcttgccatagattttcaagcagatttaagtcaaaactgcaaattggccactcaggaacattcactgtcttcttggttaacaactccagtttagatttgactttgtgttgtaggttattgtccttctgaaaggtgaatttctctcccagtgtctggtgtacaagcagactgaagcaggttttcctcaagattttgcctgtgctcagCTCCATCCCgtttcttttcatcctgaaaacCTCCCCAGTCTTTGCCTACGTCAAGCTTCTGAACTAATTTAGACTCGCCTAAATAAAGGAGGTGAATAATTACGCAACATTGAATAACAGTGaatcattttttttgttatttcatttgtaaaacattttaaaaaatttattttcactttgacattacggaGTATTTTGTGTTGATCCATTTTTACAATGAAATCTATTTCaatcctactttgtaacacaacaaaatgtgaggAAAGTTCAAGGGGGATGTAGAATTTCTATAGGCACTGTAAATCTACTTTACCATGAATCTATCTTTGGTTTCTACGCACGTGTATAGGCTACACAAGCAGTATCGTATCAAAACTATAGATTGCACATCTATTACCATCGAGAGAGATGGTCTTACATTCAGTATAAAATAGAGAGGTATCCATCCCACTTCTTACATGCTGGATAAAGCATCTTTGTTGGGCACTGTGAAAGCCATCTTATTGTATCGCGTAGCACTGAAAGTCTCCGTTTCTGTCTTATAAATCGATGGCGACATACATTAACTGCTGGTTTGAGGTTTCAGCAAAGAGCAAACAATTAGCTCCGTGACAGTAAAAAGTCAGTTTTACGTAAAGGGCAAATGTGACGCAAAACAAACTCCCAAAAAACGGTCACAAGAGGAACAGTCCAAGTCTATACGTTGCTGGAAGGTTTAGGGAAGTCATCAGTCTTTTTCAATGCCACTCAGAGATCTATTAGAAAGATGTTCCACGAAACAGAAAACAGACCTAAAATCAACTATAAACAGGAcagatgtattttatttaacctttatttaactaggcaagtcagttaagaacaaattcttattttacaatggcggcctaccctggccaaacccagacgacgctgggccaattgtgcgccaccctatgggactcccaatcggccggttgtgatacagcctggaatcgaaccagggtttgtagtgacgcctctagcactgagatgcagtgccttagaccgctgcgccactcagaagCCCTAGATGAAGTGCATACTTCCCAAAGATGGTCCACTGGTTTATAAAGTCAGTGACGAATACTAATAAGTTGATGTTTGAGGGACAAAGGGGTGAATTAGGTATTAGAGGTGAGCAAGGGCTGGGGGTATGGTCACCCTCCATCCAACCAGACAGTGGTGTGGTAGTGTAAGGCCTGCCCCATGGAGGTAGAGGTGTATGATGATTGGCTGCGAGGTGGGGAGAACCTGGTGGATTATCATGTTGGTTAGCTGTGAGGTGGGGAAAACCTGGTGGATTGCCGTGGTGATTGGCTGTGGGGTGGGGAAACCTGGTGGATTGCCGTGGTGATTGGCTGTGGGGTGGGGAAACCTGGTGGATTGTCGTGGTGATTGGCTGTGAAGTGGCGAGAAACTGTTGAGATTGTCGTTATCTGCAGGCACCAGGCTGCCGCTCCACTCAAGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2169592 lncRNA upstream 1425 6595010 ~ 6595246 (+) True G1896718
TU2169571 lncRNA upstream 47365 6548689 ~ 6549306 (+) True G1896698
TU2169318 lncRNA upstream 74033 6521325 ~ 6522638 (+) True G1896494
TU2169317 lncRNA upstream 75447 6520883 ~ 6521224 (+) True G1896493
TU2169316 lncRNA upstream 76131 6520237 ~ 6520540 (+) True G1896492
TU2169595 lncRNA downstream 5003 6604589 ~ 6604790 (+) True G1896721
TU2169612 lncRNA downstream 96621 6696207 ~ 6697600 (+) True G1896738
TU2169655 lncRNA downstream 130073 6729659 ~ 6730771 (+) True G1896780
TU2169660 lncRNA downstream 137943 6737529 ~ 6740303 (+) True G1896785
TU2169674 lncRNA downstream 157888 6757474 ~ 6760858 (+) False G1896798
XM_021582000.2 mRNA upstream 132843 6461766 ~ 6463828 (+) True sertad3
XM_021581998.2 mRNA upstream 135801 6457810 ~ 6460870 (+) True LOC110503591
XM_021581995.2 mRNA upstream 226813 6363057 ~ 6369858 (+) True LOC110503588
XM_021581993.2 mRNA upstream 240174 6285718 ~ 6356497 (+) False LOC110503587
XM_021582015.2 mRNA downstream 2394 6601980 ~ 6604021 (+) True LOC110503600
XR_002470496.2 mRNA downstream 195559 6795145 ~ 6818270 (+) False LOC110503605
XM_021582023.2 mRNA downstream 259450 6859036 ~ 6896546 (+) False LOC110503606
XM_036961816.1 mRNA downstream 277581 6877167 ~ 6896546 (+) True LOC110503606
XM_021582027.2 mRNA downstream 315757 6915343 ~ 6932895 (+) False LOC110503608
TU2168015 other upstream 1073806 5521415 ~ 5522865 (+) True G1895266
TU2168012 other upstream 1076639 5519021 ~ 5520032 (+) True bl1s3
TU2166742 other upstream 2151695 4444623 ~ 4444976 (+) True G1894083
TU2166691 other upstream 2255267 4336603 ~ 4341404 (+) False LOC118944093
TU2166174 other upstream 2306073 4289908 ~ 4290598 (+) True G1893604
TU2169780 other downstream 340830 6940416 ~ 6941556 (+) True G1896894
TU2169820 other downstream 418209 7017795 ~ 7018558 (+) True G1896931
TU2170012 other downstream 717366 7316952 ~ 7328311 (+) False LOC110503629
TU2170011 other downstream 723693 7323279 ~ 7328311 (+) True LOC110503629
TU2170319 other downstream 1476620 8076206 ~ 8079986 (+) True LOC118944073

Expression Profile