RNA id: TU2169612


Basic Information

Item Value
RNA id TU2169612
length 1394
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1896738
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6696207 ~ 6697600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAACCTTAGGTTCAAATGTTTTACATCTGGTGAAAACAACCAAGTTTCCATAAATACAGCCTGTTATCTTTTGCCAGTATGCTCTCAACAGCACGTGTTGGGAAGCAAACCTGTGTGTTTTACAGAGGAtatcacaacatactgtggtaaAGAAAATGATGGTTGTGTGAATTGAAAAAGCCAGCACAATGAGACAGTAATTACATACAGTAAGAGGTTATCTGTAGCTCTGCATGAAAATTCACAATATTACACGTCACTGCTTTAAATGTACCCACTGTGTATCATTGTGACACAGTAAACAGATTTTCATATGGGGGCCAACTATATTTTTTTCAGAGAAAAATGACTTAATTCCATGTTGAGACCAACAGCACGGGGAAAACACACACTAAATGTAGTGTTGACTTTGACACAACACCCTAAAAGGGCCTTGGACCATTTAGCATGACATCATGAAGGAAAGCAAAAACAGACATTGTTTTCACATTTTCCTGATTACAATCCTATCAGGCACACCTCTGACCAACCTGGACTGAAATGAGTATGATATGTCACAtttggtatggtatgtattaatttgtggatccatttcatatgatatgttatgaattgcaattcgtacaatatgttacaaatttgcaatacgtattatatgttatgaattcccatttgttgtggctaacgttagctaggtggctaacactaatgttagctaggtggctaacgttagctaggctaggggttagggttaaggttagctttagctaacatgctaagtagttgcaaagtagctaaaatatACTAAGTGGttgttgctaattagctaaaatactCAAGTTGTCCGTGATAAGATTCAAACATGTAACCTTTGGTTTGCTAGACGTTCACATTATATGGCAACCCATCCACGtcaaccaaccaccctccttttgtttGCGGGCTCTATTTCTTTTATGGCGACTTTTATTCTTCGGCCCTGCGCCCCACTAAAGGATGTGCGTTTGATGACACTTTAAtaccataccaaacataaaatattatactaatttgagtgGCCAGGATTTTCGTTTGCTATGTTAtgactagtctatgagaccaggctgctctGACAGTGTGTCCTACTGTACCATACAAATTAATGGGTTCATTTGGGTAAAATCTTACAGTAATTTCAAGCTTGGGTTCCTCAGAGAGTAATATAGTATACCAATTATCATATGCATGACAATCCCAAATACAGTAGTAACACAAAGATCAGTATTCACAGTGTTAGTTATTTCTGATTGATATAGGACAACTGGGGTACACTGACACCTTGTCTTACCACTGAGGATATCAATCAAATGAAATGCCTCTGTAGATTGTGTTTTATTTTGTATCAGTGTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2169595 lncRNA upstream 91417 6604589 ~ 6604790 (+) True G1896721
TU2169594 lncRNA upstream 96621 6596671 ~ 6599586 (+) True G1896720
TU2169592 lncRNA upstream 100961 6595010 ~ 6595246 (+) True G1896718
TU2169571 lncRNA upstream 146901 6548689 ~ 6549306 (+) True G1896698
TU2169318 lncRNA upstream 173569 6521325 ~ 6522638 (+) True G1896494
TU2169655 lncRNA downstream 32059 6729659 ~ 6730771 (+) True G1896780
TU2169660 lncRNA downstream 39929 6737529 ~ 6740303 (+) True G1896785
TU2169674 lncRNA downstream 59874 6757474 ~ 6760858 (+) False G1896798
TU2169677 lncRNA downstream 59874 6757474 ~ 6759138 (+) True G1896798
TU2169678 lncRNA downstream 71203 6768803 ~ 6776762 (+) True G1896799
XM_021582015.2 mRNA upstream 92186 6601980 ~ 6604021 (+) True LOC110503600
XM_021582000.2 mRNA upstream 232379 6461766 ~ 6463828 (+) True sertad3
XM_021581998.2 mRNA upstream 235337 6457810 ~ 6460870 (+) True LOC110503591
XM_021581995.2 mRNA upstream 326349 6363057 ~ 6369858 (+) True LOC110503588
XM_021581994.2 mRNA upstream 339710 6285719 ~ 6356497 (+) True LOC110503587
XR_002470496.2 mRNA downstream 97545 6795145 ~ 6818270 (+) False LOC110503605
XM_021582023.2 mRNA downstream 161436 6859036 ~ 6896546 (+) False LOC110503606
XM_036961816.1 mRNA downstream 179567 6877167 ~ 6896546 (+) True LOC110503606
XM_021582027.2 mRNA downstream 217743 6915343 ~ 6932895 (+) False LOC110503608
XM_021582028.2 mRNA downstream 217743 6915343 ~ 6932895 (+) True LOC110503608
TU2168015 other upstream 1173342 5521415 ~ 5522865 (+) True G1895266
TU2168012 other upstream 1176175 5519021 ~ 5520032 (+) True bl1s3
TU2166742 other upstream 2251231 4444623 ~ 4444976 (+) True G1894083
TU2166691 other upstream 2354803 4336603 ~ 4341404 (+) False LOC118944093
TU2166174 other upstream 2405609 4289908 ~ 4290598 (+) True G1893604
TU2169780 other downstream 242816 6940416 ~ 6941556 (+) True G1896894
TU2169820 other downstream 320195 7017795 ~ 7018558 (+) True G1896931
TU2170012 other downstream 619352 7316952 ~ 7328311 (+) False LOC110503629
TU2170011 other downstream 625679 7323279 ~ 7328311 (+) True LOC110503629
TU2170319 other downstream 1378606 8076206 ~ 8079986 (+) True LOC118944073

Expression Profile