RNA id: TCONS_00057616


Basic Information

Item Value
RNA id TCONS_00057616
length 5877
lncRNA type antisense_over
GC content 0.33
exon number 1
gene id XLOC_027115
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9340827 ~ 9346703 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgctggagctcagctctgttcaaatggctctgcagcgagcaccctctcaaaatTTTGACCGTTTTCAGCAACCGCTTGAAAAGTCATGTTCAACGAACTTTAAAACAATGAGTTGCATTCAATCTTGGTAATATTGAAATGTGGTTTCAAAAGTGTTAATGCGGTAACACTTTAGGATAAATGTACGATATTACGATAAATACTGATATCACTGTTAtgataaatgttaattaatgcatttactaacataaacaatgaacaatacatttattacactttgtttattacttattgtaaagtgtgaccgtttaTATAGCTAACATTAGCTTTCTATGTGATAAATTGCACTGATGGAGGTTCTAAAACTATTGGCAGGCGTACACATTTTCTGCCATGTTTGCACCACAGAAAATCAGAATGACTTTAGTTATAGAAACCCCTTTTGGGTGGACTAAATTAGCGCTGACTTAAAAGGGTCTAACCAGCACAACAGAAACTAGAGTAATGATGTGTGACAcaaatatgatattttaaatagttatgatatttttaagacattgaAAATGTGTGTAGATTGTGTACAAAATGTTagatatttgattattttaaatagttatgaTTTTGTACTATTaaaaattttaagtaatgtcacaTTACTGTAGTTGTATTGTAATTTTTCTCATTTGTTTTAAtcgtgtacatttttatttttatttttattttaatgggtCAAATCTGTGGCAATGTTAGGACTGggctgataaacgatattatatcgaattgTGATAACATTTATGTCAGTAATAATGATAAGCACTGCACTTTATTACTCTATAATGATGCAAAGAGCCAATCATACAGAAGAAATGTAGAACAATCGAAAAGTGTGTTGACATTTTCGGCCACTGAAAAGTTATTGGGCAAAAATATGTCATGCCATTAAATGGACTctttggaagcattaacaacttacatagaaatatatatcgttatcgttcaatatgaaAAACAATTATCGAGATTACACTTTaaccatatcgcccagccctaggcaatgttattattattattttattaaatgggaGGAACTGGTCACTTTATGGTTACAGAAAGAGGCTTAAATAAGTCCAACACCCACAAAATACTCAAGCATTTATCCAAATCATCCAGTGCTACAAGGACATATCTCTcacacgcacaaaaaaaaaaaaaaacacataaataatgtcaaattaatcattttcattttaaatacagaTCCGTTTCTGAAATTATTGGTCATTAAAACTTAACtatagttataaaacattattgaatAGTATAGTTCAACTACTAAAGTCATGCTGAAAAAATTCTGCTTCTTATATGGCATTAATCGTAGCAGAGAAAAATGGCAGTTCAGCTCTACATGAAATGGAATTTCTGTATCAAGGAGACAATGTAAGATGGTGGAGGATTGTCAGCATCTCTGTAATCCTGCAATCTGTGTGTCCTGTTTGCTGCGCCAGCCTGTTCTCTTTGCTCATTAGCACTGGAGAAAGTCATGAATACTGCAGGGCGGCGTGGAGCTCATTACATCTCCTGCGTTCAGCAGCAGCGTGAAAAATTCTTCACCCCTGACTGATCATTAATTACATGTCTTAGCTGGCAGCCGGAAAAGAGTGAGCATGAGGAAATgacaaagagagaaagaaaagtcAGCTTATTCAGGGAAAAATGGCTGACGGAACAATGCTTTCTGTTGCAGTTGAAGACATGTGAGCAGAGCATCCGTGGTGAAAGATTGGGGCGGGATTTAAATGTTTGGCCAGCCAATAGAAGGTAAGGAAACCTGTTTGGAAATAATCAATATTGCAGAAAATTTCAAGGTCATGCACTGATTTCTCAATGCTGGCAGGGCCTGAATCTCTGCTGACTGATTAATTGATCTGATAACATTTGCGAGATCTTGTCTTCTACCTCAGCAAGGACACAATGACCGTCCATGTTATTACATTCCTTGAGCACTAACTGTTTGCAAACTCTTGTGTTTTCAGCACAATAGATGAGCTGATGTCTGATTTATTTTGACTGCATTTGCTAATACAATACTGTATTACTGTAGATATACTTGACCACTTCAAATGAATGCATTAGGGTTGTCTGAATTATtagtaatttaacttttttccTGTTTTCTGCCAGTTTAATTTTCCATTGGTTTTGCACAAGCAATTATAAGCAAGTTATAGCCGTTTCTTTATATACGTTGATGTACATGATTAGAAAGAAGGGTTTTCTTTGTTATTCGTGATATTAGTTCATGTAAATAGTATTTTGACAGATAGTTTTTTAATCATCAGGGATCCCAAGTTTTTctgaaagtacttgaatttcagaaATATGatttcaaggcctggaaagttcttaaaagcaaacataagtcattgaaagtgcttgaattgaaagtttatagtgttatttcaacaattgtactgGGCTTCTTGCACaaattgaacaaaaaaatgaagaaattcttaaattaaaaatcttaGACATAAATTACGACAAATAATGCAATTAACAACACTTCAGAAACTGCATTTTAATATTACCAGGATTGAACTCACCTAATTGTCTTAAAGTTCTTCGAACAAGACTTGGAAAAGGtcaacatttttgaaaatgacacattCAAAACATCATTATTATGacattaatgtaaatattaagggtaaatgaaatgttaaatacaGGAAGGACTTTCATGGCGCAGTGGGTGTGAATTACAAAGATtcttaattttaaatgattagtgATTTCAAAAGTCCTTGAATTTGGTGAGCATTAAACAGTGGGAACCCTGAATCATACTTGGTCACAGCAACAGAAATGGGTCGCTTAGTCTAGAGTGCAGGTTTATATGTCATGCCCCTGCATCAATAAGTACTCATTGTTTTGTATCCTATGTTTTTTACTGACAGTCATATGTTGATGAATTAATCACATCTAGAAATTCAATAAAGGTcttgaatctctctctctctttaaaattTAGAGTTGCTGTTGAATTTGCATAATATGAATAAATAGGAGTGAATGTAAGAGAAGCTTTAGtgatagtgaatgagtgtgcaaaTGTTATTAATTTGTGAATTGTTTGTCTTGTATAATTGTTATGAGAAGTGATATGTTTTGAGAAATGGTGTATATTGAAAGGGTTTTAAaagtgtgtgtctctctctctctctctctctatcttcaGTGAAGTGCAGAGTTCACCTTGAGCCGTCCGCATGACTGAGCTCTACAACAGATGTCATTAAACAGGTGCTCATGTACTGATTTATCATACATCATTCCTTTCTACATTAGAGTTTCTGACAGCactgtacttttattttaaggtgcAAATCATTTTGGGTatttttaaggtgtccttgtacTTACTATGGTTATACATTCCATGTGCTTACTaaagtaattacaattaattatgatTAAGTTAGATGCAACTAACTCTAAACTCAATTCACATTCCAACCCTGTAAGTAagtacatttaattaatattactcagtaataaaataaacaattacctactttttgtgtgtgttatgtaAGGATAGGAAAACTGCGATTATGCCATTTTGCCtcaaaagacaaacaaaatgcCAATTGAAACTAATTAAATCATCAAAATATTAACATATCTATAGGcgaattaccggtttgtaaacattcaggatgcgcgcgcagcgaggttgcagaaaaaaaacaggagcactagcatttacagcgagggaataaCATGCGATGCGATACAGAGTTTGTTGCTGTGTTAGAGATAAGATATGttgattatgtattatttatattatttacataatgctttcagcatattaaaacagcttgtcactcagtgataagcacagtttttcagcaaaattaacaataaagtgattggcgttcgtctgacaggtccatttgtgatagcaccctcccaatgaatattggataggACAagaagcatccagccccaaatttactcatctcattgaagctccacgTGTTGTAACGAGAGAAGTTAAAGGCTTACAAGTCTTTGGATACCTACAATTTTTTTCTGTGgtgtcatgtgcaagaaataatgttacATGATTActagattcaaaactatgtagtgctaaaaactgaggttctgcctagccacaGAAAAGAAGGCAGACGTGTATAaagcctgggtaatcatcaacaagcaaaataaatgcgttctgacagtgaactgcacctgtacggcagggtatgcggaaaaacatttttacatttcaatctaagcattcagtgtccgcagtttaatgaaccatatttaattgtttttgctgaaatcattgctgcaatcaaaaacgtgTAATGTGAATGATTCAGCAtagtgtgaacttacctgatataacatgagaactgcagagtccagcatttttaattaggtcctcactccattcagctcttatgatggctgttagccaaagacatctgcgattggcattaaaagcagtgtggtgtacggtaaaatttaagttttctatttttggactttcaaTTTTGGCATcttaccgcacaacacgacatgtttgctattgcaaccgatCTTTATTGCAACTGGTATGCGTGATTAAATCCGTGTGACCTAGGTTGGTACCTcccctatccgcttgttaagtgtgaggTCATgcgaagcagcttccgggtccaagcgctctattcaactgtatggggagactcatgaaatggtaattataaacgtttacaaagcgatttaatactttcgaaaatcacgatcgcaatatatatgtccatgcctaatatccgatggccagaaagtcattctttttttataaattgttaaaattttggtatttgtgatgcagcaagcccagagattgttgtgcacaccatgactttatataaaatgaactttattgtgtgatatgaattaaaagtgatcataaacaaatagtttctcaactcaaatgagtggcggcttggacccggaaacagtattacatacttCACCAACACATCATcgcttaacaagcggatacatcTAAAAATATCAATACCATTAAATGTAcgaaaaaaagtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatatatatatatatatacttgtagtttttatatatatagatatatagataatctttagataatattttgtattgtgtattttagataatcttatttaatgtttatatattatacctGTTCTATGTAATACTGTATTAATTACTTCAAATTATACCTAAATAATTTTGAAATATCTCATTTGGATAGATATATTACCTTATAACTAAATGTGCAtatgaaattatataaataaatgtgtacaaCACcgctaaatatacaaaaaaacattatatatatatattttttttttcaacttatttaatGGTTATACTATTCCTGTGCTGTCATACTGCATTTACTTTTAATAAGTCTGAAATAACCTTGAAAAATCTCTTGCTTTAATAGATATATTACCTTATAACtaattatgcatataaaatgATATTAATAAGTGTGTACATAAATGACAATGAATTCAAACAAGGTAAGCCAAAGCTCCCTCTGGTGGTATAATTAATACAAAACAACAACTGAGACACTCCCAAAACACACACCTAAATGATCTTCATAATCCCATAGTTTCTTAATCCACTTGTTTACTAATTCTTTCTTGCAGCAGGTCAACAGGCGGTCTCTCACCTGGAGCTGTATTTCTGCAGGATGCTGTCCAGCGCGCCCACCAACTCCTCAGAGTTGACAGTCTTCTGG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0016477 cell migration biological_process
GO:0001525 angiogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0032502 developmental process biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0001944 vasculature development biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057615 lncRNA upstream 137759 9197350 ~ 9203068 (+) True XLOC_027113
TCONS_00057614 lncRNA upstream 191873 9107259 ~ 9148954 (+) True XLOC_027111
TCONS_00057613 lncRNA upstream 455104 8874565 ~ 8885723 (+) True XLOC_027107
TCONS_00057129 lncRNA upstream 602941 8710619 ~ 8737886 (+) True XLOC_027104
TCONS_00057130 lncRNA upstream 614376 8716125 ~ 8726451 (+) True XLOC_027105
TCONS_00057618 lncRNA downstream 216 9346919 ~ 9352632 (+) True XLOC_027116
TCONS_00053446 lncRNA downstream 125299 9472002 ~ 9472944 (+) True XLOC_027119
TCONS_00053457 lncRNA downstream 267690 9614393 ~ 9616062 (+) True XLOC_027125
TCONS_00057619 lncRNA downstream 276588 9623291 ~ 9627352 (+) False XLOC_027126
TCONS_00053458 lncRNA downstream 276752 9623455 ~ 9627352 (+) False XLOC_027126
TCONS_00053438 mRNA upstream 5792 9279784 ~ 9335035 (+) True XLOC_027114
TCONS_00053437 mRNA upstream 6983 9279515 ~ 9333844 (+) False XLOC_027114
TCONS_00053434 mRNA upstream 157225 9177997 ~ 9183602 (+) False XLOC_027112
TCONS_00053436 mRNA upstream 157674 9178913 ~ 9183153 (+) True XLOC_027112
TCONS_00053435 mRNA upstream 160146 9178002 ~ 9180681 (+) False XLOC_027112
TCONS_00053439 mRNA downstream 13829 9360532 ~ 9388764 (+) False XLOC_027117
TCONS_00053440 mRNA downstream 13994 9360697 ~ 9389359 (+) False XLOC_027117
TCONS_00053441 mRNA downstream 14042 9360745 ~ 9388823 (+) True XLOC_027117
TCONS_00053442 mRNA downstream 47723 9394426 ~ 9466248 (+) False XLOC_027118
TCONS_00053443 mRNA downstream 53309 9400012 ~ 9448700 (+) False XLOC_027118
TCONS_00053421 other upstream 837026 8503687 ~ 8503801 (+) True XLOC_027102
TCONS_00053415 other upstream 1206117 8134594 ~ 8134710 (+) True XLOC_027099
TCONS_00053390 other upstream 1925390 7415337 ~ 7415437 (+) True XLOC_027085
TCONS_00053383 other upstream 2176953 7163758 ~ 7163874 (+) True XLOC_027083
TCONS_00053382 other upstream 2315544 7025167 ~ 7025283 (+) True XLOC_027081
TCONS_00053451 other downstream 245828 9592531 ~ 9598700 (+) True XLOC_027123
TCONS_00053480 other downstream 1360052 10706755 ~ 10713584 (+) False XLOC_027140
TCONS_00053484 other downstream 1406037 10752740 ~ 10763285 (+) False XLOC_027142
TCONS_00053515 other downstream 2219337 11566040 ~ 11566156 (+) True XLOC_027157
TCONS_00053520 other downstream 2377527 11724230 ~ 11729130 (+) True XLOC_027159

Expression Profile

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