RNA id: TU2174218



Basic Information


Item Value
RNA id TU2174218
length 302
lncRNA type read_through
GC content 0.33
exon number 2
gene id G1900970
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 9757960 ~ 9823033 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgcccagtgggatgtCTTCAGGTAATTAAAATTCAGACAagactgatttaaaaaaataaaaaatatctagATTGTCATATACCCAGAATCTCTTAGTATATACGCATTGCATAAAACAACAATTGGTTATGACCATACAGAAGGCAAGTATTATAGGATCCAGTACTCGATAAAGAGAATAAAATCTGATGGAGAAATGAAATTGCCTTTTTAATTCGGCTAACATCAATAGCTACAATCAACAGTCACATCAATGGATACTGGATAGACGATATTACTGCAAATGCAAATAATCTGTGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2174193 lncRNA downstream 22712 9734960 ~ 9735248 (-) True G1900949
TU2174189 lncRNA downstream 26023 9731694 ~ 9731937 (-) True G1900945
TU2174163 lncRNA downstream 60511 9682428 ~ 9697449 (-) True G1900922
TU2174140 lncRNA downstream 128708 9617548 ~ 9629252 (-) False G1900903
TU2174139 lncRNA downstream 128708 9623537 ~ 9629252 (-) True G1900903
TU2174297 lncRNA upstream 65850 9888883 ~ 9943437 (-) True G1901047
TU2174215 lncRNA upstream 98838 9921871 ~ 9922678 (-) True G1900968
TU2174327 lncRNA upstream 109501 9932534 ~ 9937452 (-) True G1901071
TU2174343 lncRNA upstream 149761 9972794 ~ 9973426 (-) True G1901082
TU2174348 lncRNA upstream 161275 9984308 ~ 9985894 (-) True G1901087
XM_036961761.1 mRNA downstream 27647 9657971 ~ 9730313 (-) True dpf1
XM_021582146.2 mRNA downstream 103312 9652570 ~ 9654648 (-) True LOC110503686
XM_021582139.2 mRNA downstream 149714 9606325 ~ 9608246 (-) True LOC110503684
XM_021582136.2 mRNA downstream 164877 9587197 ~ 9593083 (-) True LOC110503681
XM_036961834.1 mRNA downstream 178021 9570867 ~ 9579939 (-) False LOC110503680
XM_021582149.2 mRNA upstream 25189 9848222 ~ 9861863 (-) False LOC110503688
XM_021582148.2 mRNA upstream 25189 9848222 ~ 9862581 (-) True LOC110503688
LOC110503315 mRNA upstream 57064 9880097 ~ 9887061 (-) True LOC110503315
XM_021582151.2 mRNA upstream 69188 9892221 ~ 9897938 (-) True LOC110503691
XM_036961901.1 mRNA upstream 101278 9924311 ~ 9941768 (-) True LOC110503694
TU2174075 other downstream 183811 9570871 ~ 9574149 (-) True LOC110503680
TU2173065 other downstream 1709986 8046779 ~ 8047974 (-) True G1899875
TU2169441 other downstream 3297895 6458521 ~ 6460065 (-) True LOC110503590
TU2169340 other downstream 3526152 6182412 ~ 6231808 (-) True LOC118944082
TU2169333 other downstream 3559597 6182412 ~ 6198363 (-) False LOC118944082
TU2174329 other upstream 182339 10005372 ~ 10008340 (-) False G1901072
TU2174330 other upstream 182339 10005372 ~ 10012354 (-) True G1901072
TU2174494 other upstream 382187 10205220 ~ 10205948 (-) True G1901206
TU2174598 other upstream 576009 10399042 ~ 10399857 (-) True G1901302
TU2174716 other upstream 793891 10616924 ~ 10617481 (-) True G1901405

Expression Profile