Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00053448 |
| length | 1845 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 8 |
| gene id | XLOC_027121 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 9508505 ~ 9515398 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0061484 | hematopoietic stem cell homeostasis | biological_process |
| GO:0008284 | positive regulation of cell population proliferation | biological_process |
| GO:0035162 | embryonic hemopoiesis | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005125 | cytokine activity | molecular_function |
| GO:0005173 | stem cell factor receptor binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070424-2 | Predicted to enable cytokine activity and stem cell factor receptor binding activity. Acts upstream of or within embryonic hemopoiesis and hematopoietic stem cell homeostasis. Predicted to be located in several cellular components, including extracellular region; filopodium; and lamellipodium. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including caudal vein plexus; central nervous system; gonad; kidney; and otic vesicle. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 69 and familial progressive hyperpigmentation with or without hypopigmentation. Orthologous to human KITLG (KIT ligand). |
| ensembl_id | ENSDART00000080842 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00053446 | lncRNA | upstream | 35561 | 9472002 ~ 9472944 (+) | True | XLOC_027119 |
| TCONS_00057618 | lncRNA | upstream | 155873 | 9346919 ~ 9352632 (+) | True | XLOC_027116 |
| TCONS_00057616 | lncRNA | upstream | 161802 | 9340827 ~ 9346703 (+) | False | XLOC_027115 |
| TCONS_00057617 | lncRNA | upstream | 161802 | 9342090 ~ 9346703 (+) | True | XLOC_027115 |
| TCONS_00057615 | lncRNA | upstream | 305437 | 9197350 ~ 9203068 (+) | True | XLOC_027113 |
| TCONS_00053457 | lncRNA | downstream | 98995 | 9614393 ~ 9616062 (+) | True | XLOC_027125 |
| TCONS_00057619 | lncRNA | downstream | 107893 | 9623291 ~ 9627352 (+) | False | XLOC_027126 |
| TCONS_00053458 | lncRNA | downstream | 108057 | 9623455 ~ 9627352 (+) | False | XLOC_027126 |
| TCONS_00053459 | lncRNA | downstream | 108063 | 9623461 ~ 9627352 (+) | False | XLOC_027126 |
| TCONS_00057620 | lncRNA | downstream | 108084 | 9623482 ~ 9627352 (+) | False | XLOC_027126 |
| TCONS_00053447 | mRNA | upstream | 5659 | 9478500 ~ 9502846 (+) | True | XLOC_027120 |
| TCONS_00053445 | mRNA | upstream | 32087 | 9467049 ~ 9476418 (+) | False | XLOC_027119 |
| TCONS_00053442 | mRNA | upstream | 42257 | 9394426 ~ 9466248 (+) | False | XLOC_027118 |
| TCONS_00053444 | mRNA | upstream | 48309 | 9450415 ~ 9460196 (+) | True | XLOC_027118 |
| TCONS_00053443 | mRNA | upstream | 59805 | 9400012 ~ 9448700 (+) | False | XLOC_027118 |
| TCONS_00053449 | mRNA | downstream | 21462 | 9536860 ~ 9539424 (+) | True | XLOC_027122 |
| TCONS_00053450 | mRNA | downstream | 77088 | 9592486 ~ 9601691 (+) | False | XLOC_027123 |
| TCONS_00053452 | mRNA | downstream | 94507 | 9609905 ~ 9611875 (+) | False | XLOC_027124 |
| TCONS_00053453 | mRNA | downstream | 94547 | 9609945 ~ 9611504 (+) | True | XLOC_027124 |
| TCONS_00053454 | mRNA | downstream | 97176 | 9612574 ~ 9619272 (+) | False | XLOC_027125 |
| TCONS_00053421 | other | upstream | 1004704 | 8503687 ~ 8503801 (+) | True | XLOC_027102 |
| TCONS_00053415 | other | upstream | 1373795 | 8134594 ~ 8134710 (+) | True | XLOC_027099 |
| TCONS_00053390 | other | upstream | 2093068 | 7415337 ~ 7415437 (+) | True | XLOC_027085 |
| TCONS_00053383 | other | upstream | 2344631 | 7163758 ~ 7163874 (+) | True | XLOC_027083 |
| TCONS_00053382 | other | upstream | 2483222 | 7025167 ~ 7025283 (+) | True | XLOC_027081 |
| TCONS_00053451 | other | downstream | 77133 | 9592531 ~ 9598700 (+) | True | XLOC_027123 |
| TCONS_00053480 | other | downstream | 1191357 | 10706755 ~ 10713584 (+) | False | XLOC_027140 |
| TCONS_00053484 | other | downstream | 1237342 | 10752740 ~ 10763285 (+) | False | XLOC_027142 |
| TCONS_00053515 | other | downstream | 2050642 | 11566040 ~ 11566156 (+) | True | XLOC_027157 |
| TCONS_00053520 | other | downstream | 2208832 | 11724230 ~ 11729130 (+) | True | XLOC_027159 |
