RNA id: TU2174396



Basic Information


Item Value
RNA id TU2174396
length 277
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G1901131
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10080673 ~ 10080949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGTCAAAAGACAGACCAATACACACAGTAGGAGTCAGGAGGTGGGTTTATATCAAACAGaggttggagaggagagggaagttaGTAAAGTGCAAACTAAAGGGAGAAAATCCAAAAccagacagtagagcacagtccTGGTTACTCTATGCAAATCTGCTTCCAGACTGAAGCCTAGTGATGGCTTGGAGCCGGCCGGACTCTCATTGGTTATTCTACCTTAGCCAGCAACACTTCCAACACCATCTTAACCATTATCATCATAGTTCAATTGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2174394 lncRNA downstream 1101 10079342 ~ 10079572 (-) True G1901129
TU2174393 lncRNA downstream 1400 10078891 ~ 10079273 (-) True G1901128
TU2174391 lncRNA downstream 8201 10072238 ~ 10072472 (-) True G1901126
TU2174361 lncRNA downstream 53604 10026853 ~ 10027069 (-) True G1901100
TU2174349 lncRNA downstream 94063 9986142 ~ 9986610 (-) True G1901088
TU2174399 lncRNA upstream 2451 10083400 ~ 10083697 (-) True G1901134
TU2174401 lncRNA upstream 3552 10084501 ~ 10084806 (-) True G1901136
TU2174402 lncRNA upstream 3921 10084870 ~ 10085101 (-) True G1901137
TU2174403 lncRNA upstream 5043 10085992 ~ 10086250 (-) True G1901138
TU2174404 lncRNA upstream 5667 10086616 ~ 10086822 (-) True G1901139
XM_021582159.2 mRNA downstream 68269 10009361 ~ 10012404 (-) True LOC110503698
XM_021582162.2 mRNA downstream 71686 10005340 ~ 10008987 (-) True LOC110503700
XM_021582160.2 mRNA downstream 72293 10005340 ~ 10008380 (-) False LOC110503700
XM_021582161.2 mRNA downstream 72323 10005340 ~ 10008350 (-) False LOC110503700
XM_036961998.1 mRNA downstream 73092 10005340 ~ 10007581 (-) False LOC110503700
XM_021582171.2 mRNA upstream 23617 10104566 ~ 10114246 (-) False LOC110503704
XM_036961836.1 mRNA upstream 23617 10104566 ~ 10114246 (-) False LOC110503704
XM_036961837.1 mRNA upstream 25056 10106005 ~ 10114248 (-) False LOC110503704
XM_036961067.1 mRNA upstream 48943 10129892 ~ 10139994 (-) False LOC110503316
XM_021582172.2 mRNA upstream 62079 10143028 ~ 10153093 (-) False LOC110503705
TU2174330 other downstream 68319 10005372 ~ 10012354 (-) True G1901072
TU2174329 other downstream 72333 10005372 ~ 10008340 (-) False G1901072
TU2174075 other downstream 506524 9570871 ~ 9574149 (-) True LOC110503680
TU2173065 other downstream 2032699 8046779 ~ 8047974 (-) True G1899875
TU2169441 other downstream 3620608 6458521 ~ 6460065 (-) True LOC110503590
TU2174494 other upstream 124271 10205220 ~ 10205948 (-) True G1901206
TU2174598 other upstream 318093 10399042 ~ 10399857 (-) True G1901302
TU2174716 other upstream 535975 10616924 ~ 10617481 (-) True G1901405
TU2174839 other upstream 772882 10853831 ~ 10856437 (-) True G1901516
TU2175108 other upstream 834605 10915554 ~ 10917934 (-) False LOC110503734

Expression Profile