RNA id: TU2174814


Basic Information

Item Value
RNA id TU2174814
length 656
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1901492
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10811416 ~ 10812071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTGtatacatataactaggaataaagtgacagaatAGTAAactgtagcagcagtgtatatgaTGAGTCaaaaagttagtgcaaaaagggtcaatgcagacagTCCAGGGAGCTATTTggtttaactaactatttagcagttttatggcttgggggtagaagctgttcagggtcctgttggttccagacttgatgcataagtaccgcttgccatgcggtagcagagagaacactaggacttgggtggctggagtctttgaccatttttagggccttcctctgacaccgcctggtatagaggtcctgaatggcatagagcttggccctagtgatgtactgggccgtacgcacaacACTCTGTAGCGTcttgcagtcggatgccaagcagttgccatacgaaGCGGTAATGcatccagtcaagatgctctcagcgGTGCAGgtgtagaactttttgaagatctgagggccAATGCATTTAGCTCCTCTGGCTGGCTGGTttatctgtgatagtttgcaagccctgccacatccaatgagCTTCAGAGCCGGTgaagtaggattcgatcttagtcctttattgaacctttgcctgtttgatagtttGTTGGAGGGCGTAGCTatatttcttataagcatccgggttagtgtcccgctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2174765 lncRNA downstream 90191 10720899 ~ 10721225 (-) True G1901448
TU2174703 lncRNA downstream 218447 10592086 ~ 10592969 (-) True G1901392
TU2174699 lncRNA downstream 223845 10587103 ~ 10587571 (-) True G1901388
TU2174449 lncRNA downstream 226887 10584164 ~ 10584529 (-) True G1901170
TU2174691 lncRNA downstream 246365 10564823 ~ 10565051 (-) True G1901380
TU2174823 lncRNA upstream 8942 10821013 ~ 10821392 (-) True G1901501
TU2174861 lncRNA upstream 40527 10852598 ~ 10853532 (-) True G1901532
TU2175120 lncRNA upstream 58906 10870977 ~ 10871522 (-) True G1901752
TU2175118 lncRNA upstream 61733 10873804 ~ 10874236 (-) True LOC110503731
TU2175131 lncRNA upstream 79577 10891648 ~ 10891902 (-) True G1901763
XM_036961237.1 mRNA downstream 2012 10765892 ~ 10809404 (-) False LOC110503728
XR_005039311.1 mRNA downstream 2012 10765892 ~ 10809404 (-) True LOC110503728
XM_036961238.1 mRNA downstream 8339 10765892 ~ 10803077 (-) False LOC110503728
XM_036961239.1 mRNA downstream 81005 10726288 ~ 10730411 (-) True LOC110503726
XM_021582212.2 mRNA downstream 81532 10726288 ~ 10729884 (-) False LOC110503726
XM_021582217.2 mRNA upstream 61709 10873780 ~ 10877199 (-) False LOC110503731
XM_021582218.2 mRNA upstream 93258 10905329 ~ 10912872 (-) True LOC110503733
XM_021582219.2 mRNA upstream 103400 10915471 ~ 10917882 (-) False LOC110503734
NM_001124673.1 mRNA upstream 160020 10972091 ~ 10982118 (-) True shbgb
XM_021582223.2 mRNA upstream 174339 10986410 ~ 11027878 (-) False LOC110503738
TU2174716 other downstream 193935 10616924 ~ 10617481 (-) True G1901405
TU2174598 other downstream 411559 10399042 ~ 10399857 (-) True G1901302
TU2174494 other downstream 605468 10205220 ~ 10205948 (-) True G1901206
TU2174330 other downstream 799062 10005372 ~ 10012354 (-) True G1901072
TU2174329 other downstream 803076 10005372 ~ 10008340 (-) False G1901072
TU2174839 other upstream 41760 10853831 ~ 10856437 (-) True G1901516
TU2175108 other upstream 103483 10915554 ~ 10917934 (-) False LOC110503734
TU2175112 other upstream 104054 10916125 ~ 10917934 (-) False LOC110503734
TU2175110 other upstream 104123 10916194 ~ 10917934 (-) False LOC110503734
TU2175109 other upstream 104312 10916383 ~ 10917934 (-) False LOC110503734

Expression Profile