RNA id: TU2175120


Basic Information

Item Value
RNA id TU2175120
length 546
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1901752
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10870977 ~ 10871522 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAATACACCATCTCTTCTCACCACAATGTTGTAGCCTAATACACCATCTCTTCTCACCACAATGTTGTAGCCTAATACACCATCTCTTCTCACCACAATGTTGTAGCCTAATACACCATCTCTTCTCACCCCAATGTTGTAGCCTAATACACCATCTCTTCTCACCACAATGTTGTAGCCTAATACACCATCTCTTCTCACCACAATGTTGTAGCCTAATACACCATCTCTTCTCACCACAATGTTGTAGCCTAGTACACCATCTCTTCTCACCACAATGTTGTAGCCTAATACACCATCTCTTCTCACCACAATGTTGTAGCCTAATACACCATCTCTTCTCACCACAATGTTGTAGCCTAATAATACACCATCTCTTCTCACCACAATGTTGTAGCCTAATAATACACCATCTCTTCTCACCACAATGTTGTAGCCTCTTTGAATACATTGATCACAGGACATTAAGGCCAACATTTGTTATTTCTTTTCCTGTCGACAATTTGGTCCATAATTACCTCTCTTGCTTTGGCGCAATTTTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2174861 lncRNA downstream 17445 10852598 ~ 10853532 (-) True G1901532
TU2174823 lncRNA downstream 49585 10821013 ~ 10821392 (-) True G1901501
TU2174814 lncRNA downstream 58906 10811416 ~ 10812071 (-) True G1901492
TU2174765 lncRNA downstream 149752 10720899 ~ 10721225 (-) True G1901448
TU2174703 lncRNA downstream 278008 10592086 ~ 10592969 (-) True G1901392
TU2175118 lncRNA upstream 2282 10873804 ~ 10874236 (-) True LOC110503731
TU2175131 lncRNA upstream 20126 10891648 ~ 10891902 (-) True G1901763
TU2175132 lncRNA upstream 20471 10891993 ~ 10892332 (-) True G1901764
TU2175180 lncRNA upstream 99621 10971143 ~ 10971351 (-) True G1901811
TU2175177 lncRNA upstream 112402 10983924 ~ 10986794 (-) True LOC110503738
XM_036961237.1 mRNA downstream 61573 10765892 ~ 10809404 (-) False LOC110503728
XR_005039311.1 mRNA downstream 61573 10765892 ~ 10809404 (-) True LOC110503728
XM_036961238.1 mRNA downstream 67900 10765892 ~ 10803077 (-) False LOC110503728
XM_036961239.1 mRNA downstream 140566 10726288 ~ 10730411 (-) True LOC110503726
XM_021582212.2 mRNA downstream 141093 10726288 ~ 10729884 (-) False LOC110503726
XM_021582217.2 mRNA upstream 2258 10873780 ~ 10877199 (-) False LOC110503731
XM_021582218.2 mRNA upstream 33807 10905329 ~ 10912872 (-) True LOC110503733
XM_021582219.2 mRNA upstream 43949 10915471 ~ 10917882 (-) False LOC110503734
NM_001124673.1 mRNA upstream 100569 10972091 ~ 10982118 (-) True shbgb
XM_021582223.2 mRNA upstream 114888 10986410 ~ 11027878 (-) False LOC110503738
TU2174839 other downstream 14540 10853831 ~ 10856437 (-) True G1901516
TU2174716 other downstream 253496 10616924 ~ 10617481 (-) True G1901405
TU2174598 other downstream 471120 10399042 ~ 10399857 (-) True G1901302
TU2174494 other downstream 665029 10205220 ~ 10205948 (-) True G1901206
TU2174330 other downstream 858623 10005372 ~ 10012354 (-) True G1901072
TU2175108 other upstream 44032 10915554 ~ 10917934 (-) False LOC110503734
TU2175112 other upstream 44603 10916125 ~ 10917934 (-) False LOC110503734
TU2175110 other upstream 44672 10916194 ~ 10917934 (-) False LOC110503734
TU2175109 other upstream 44861 10916383 ~ 10917934 (-) False LOC110503734
TU2175111 other upstream 44899 10916421 ~ 10918092 (-) False LOC110503734

Expression Profile