RNA id: TU2175132



Basic Information


Item Value
RNA id TU2175132
length 340
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1901764
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10891993 ~ 10892332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctgagaaatcgcccggaaattgcggtcaccacaacgctgaaaaatattccaaattagctccataatatcgacagaaacatggcaaacgttgtttagaatccatcctcaaggtgtttttctaatatctattcgataatatatccgtcgggacaattcgtttttcactaggaccgattggagtaatggctacctctgtattttactcgagaatctctctcggagccaccatgtgaccacttacgcattgtggccgcctacggctattcttcaacagaaatgcgtaaaactatgtcacaatgctgtagacaccttggggaatacgtagaaagcgtaagctcgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2175131 lncRNA downstream 91 10891648 ~ 10891902 (-) True G1901763
TU2175118 lncRNA downstream 17757 10873804 ~ 10874236 (-) True LOC110503731
TU2175120 lncRNA downstream 20471 10870977 ~ 10871522 (-) True G1901752
TU2174861 lncRNA downstream 38461 10852598 ~ 10853532 (-) True G1901532
TU2174823 lncRNA downstream 70601 10821013 ~ 10821392 (-) True G1901501
TU2175180 lncRNA upstream 78811 10971143 ~ 10971351 (-) True G1901811
TU2175177 lncRNA upstream 91592 10983924 ~ 10986794 (-) True LOC110503738
TU2175196 lncRNA upstream 126688 11019020 ~ 11019391 (-) True G1901827
TU2175205 lncRNA upstream 137194 11029526 ~ 11029754 (-) True G1901836
TU2175212 lncRNA upstream 139113 11031445 ~ 11032378 (-) True G1901838
XM_021582217.2 mRNA downstream 14794 10873780 ~ 10877199 (-) False LOC110503731
XM_036961237.1 mRNA downstream 82589 10765892 ~ 10809404 (-) False LOC110503728
XR_005039311.1 mRNA downstream 82589 10765892 ~ 10809404 (-) True LOC110503728
XM_036961238.1 mRNA downstream 88916 10765892 ~ 10803077 (-) False LOC110503728
XM_036961239.1 mRNA downstream 161582 10726288 ~ 10730411 (-) True LOC110503726
XM_021582218.2 mRNA upstream 12997 10905329 ~ 10912872 (-) True LOC110503733
XM_021582219.2 mRNA upstream 23139 10915471 ~ 10917882 (-) False LOC110503734
NM_001124673.1 mRNA upstream 79759 10972091 ~ 10982118 (-) True shbgb
XM_021582223.2 mRNA upstream 94078 10986410 ~ 11027878 (-) False LOC110503738
XM_021582224.2 mRNA upstream 101031 10993363 ~ 11027881 (-) False LOC110503738
TU2174839 other downstream 35556 10853831 ~ 10856437 (-) True G1901516
TU2174716 other downstream 274512 10616924 ~ 10617481 (-) True G1901405
TU2174598 other downstream 492136 10399042 ~ 10399857 (-) True G1901302
TU2174494 other downstream 686045 10205220 ~ 10205948 (-) True G1901206
TU2174330 other downstream 879639 10005372 ~ 10012354 (-) True G1901072
TU2175108 other upstream 23222 10915554 ~ 10917934 (-) False LOC110503734
TU2175112 other upstream 23793 10916125 ~ 10917934 (-) False LOC110503734
TU2175110 other upstream 23862 10916194 ~ 10917934 (-) False LOC110503734
TU2175109 other upstream 24051 10916383 ~ 10917934 (-) False LOC110503734
TU2175111 other upstream 24089 10916421 ~ 10918092 (-) False LOC110503734

Expression Profile