RNA id: TU2175311


Basic Information

Item Value
RNA id TU2175311
length 1632
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G1901922
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 11190675 ~ 11192759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGTTTGTGTTCACTTCAATCTTTATTGTTACATCATTGAACATAGATAATACTCATGTGGTTCTTCTCTTTTAGAAAAAGGACAATGATCCTAGTTGGCTAAACATCAGTCAAGTGGAGAGCTCACTCAGTGCTCTGGGTGGGCAGAGATTACATTAAGaaccaatggaatggtctaaaatgTTCCGCCCATCCGGCGCCCCAAAACCAATCCACCCAGGGGTTGACCCTGAGTGGAACAACACAAccgcacacagacagagagagacacctaTACCTGGGACACAGAAGCACATGTTGCTGGAGCAGACTCACCAGCTGACCTGTCAATCATCCACACAAGACCCGCCCTCCCCACCTGTCAGTCATCCACACAAGACCCGCCCATTGGCTACTCCGACCACTCCTGCGAAAAACACTGTCCTCATATAGGGAAACCATACAACACTGTGAATACAATTATTTCTCCTTCTTTACTTGTACAGAACTTgtaaataacaaaaacatgacaaccaatgtttgtttttttaaaacacTGTTTTAAAGCTTCCCCCATAGTGGTTTTTACGTCTGTTCTACTTCTACCACACGTTGTTGCCTGAAGAAGGAGACGATTTTGGCACAAACCTGGTAAAGATACAGTAAATCAATCACAATGTACAGGTTTCAAAATTATGCAGAAACCATCAAATCTACCCATGCATCAAGTAAGGCAACCTACTGCAGATTTTTTATatagaaagatatatatatatatatatatcgtacTGCACTATGACAAGTGCACCTATTTCTACCACACCTGTAAGAACTCCTATCAGCAGCCTCTGCTGAATCTACACTTTAAACTGAGCTCATGGGTTGGTGGGGGATGTCAGGAACCGCCCCCTTTAGGACCCCAATGGCATCCTGGGTAATGTAGTCACATTCTACTGGAGAGAAGTAGCATAATGCAAGGTGCGCTCTTATGCTACAGTAGCTTTATGGATATTCCAACCGTAAAATAGATTTGTATTTTTCTTCCCGCAGGACTATTGTTTTGTCCACATTTATTTTTTCAATGTTTATGTAAAGAAATACTAAATGGTTTGCATTGACTGAATTTGTGTGTATTGGTGCACATCCGAACATGTCCAGTTAGttgtgtgtgtgaacaggtgatgcgtgatactgtgtgtgggtgggtgtgctgCCTCTGTGTTTTCTACAAATCTTTTGTTTTGATCAAAGTGACCAGGGGCTTGTCGTCAGGGCTGTAGTCCTCGTAGGTGATGGGTGCGGCGTCGTACATGGCTGGCCGGGACTTCTTCCCAAATCTGAGAGAGGGGACGAAAACACATACATGGAACATCACTTCAGAGTGAGCGAACATTGTGCCGTCTCACCTGGCGTGGCGGATGGAGGCGATGGCGTTGCTGAACTCGCTGTCGATGCTGCGGCAGTTGTAGAACTCCTGGTAGGCATGGCGAGATGAGCCCTGGTACTCGATGCGGCTGATGCGGCAGATGCCCACGATGAGGATGATGAGCATGAGGACGAAGGCCACGCACAGGGCACCGATGATGATGTAGAGGGAGTGACGTGGCATGTTGGTCAGGGTGTCCTCAGGGTGGGCCGTCTTCCACTGCaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2175251 lncRNA downstream 81258 11109122 ~ 11109417 (-) True G1901874
TU2175250 lncRNA downstream 81642 11108721 ~ 11109033 (-) True G1901873
TU2175249 lncRNA downstream 82415 11108038 ~ 11108260 (-) True G1901872
TU2175247 lncRNA downstream 84589 11104687 ~ 11106086 (-) True G1901870
TU2175212 lncRNA downstream 158297 11031445 ~ 11032378 (-) True G1901838
TU2175315 lncRNA upstream 416 11193175 ~ 11193578 (-) True G1901925
TU2175318 lncRNA upstream 2809 11195568 ~ 11207179 (-) True G1901927
TU2175340 lncRNA upstream 48075 11240834 ~ 11241148 (-) True G1901948
TU2175493 lncRNA upstream 79452 11272211 ~ 11272504 (-) True G1902093
TU2175590 lncRNA upstream 237375 11430134 ~ 11430370 (-) True G1902181
XM_021582225.2 mRNA downstream 142818 11046623 ~ 11047857 (-) True fbxo36a
XM_021582221.2 mRNA downstream 145127 11034019 ~ 11045548 (-) False LOC110503737
XM_036961236.1 mRNA downstream 145127 11034019 ~ 11045548 (-) True LOC110503737
XM_021582222.2 mRNA downstream 146125 11034019 ~ 11044550 (-) False LOC110503737
XM_021582224.2 mRNA downstream 162794 10993363 ~ 11027881 (-) False LOC110503738
XM_036961327.1 mRNA upstream 221088 11413847 ~ 11428871 (-) False daw1
XM_036961328.1 mRNA upstream 221088 11413847 ~ 11428873 (-) True daw1
XM_036961054.1 mRNA upstream 260608 11453367 ~ 11478283 (-) False LOC110503748
XM_036961053.1 mRNA upstream 260608 11453367 ~ 11478285 (-) False LOC110503748
XM_021582249.2 mRNA upstream 260608 11453367 ~ 11478286 (-) False LOC110503748
TU2175111 other downstream 272583 10916421 ~ 10918092 (-) False LOC110503734
TU2175108 other downstream 272741 10915554 ~ 10917934 (-) False LOC110503734
TU2175605 other upstream 260645 11453404 ~ 11455158 (-) False LOC110503748
TU2175607 other upstream 260645 11453404 ~ 11461047 (-) True LOC110503748
TU2176372 other upstream 775083 11967842 ~ 12052648 (-) True G1902875
TU2176356 other upstream 787052 11979811 ~ 11980462 (-) True LOC110503324
TU2177124 other upstream 1524691 12717450 ~ 12723997 (-) False LOC110503775

Expression Profile