RNA id: TU2175493


Basic Information

Item Value
RNA id TU2175493
length 294
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1902093
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 11272211 ~ 11272504 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaagttggattggcttgatgggcacttcttacgtaccatacggtcatgcttctcccacaacagctcaatagggttgagatctggtgactgtgctggccactccattatagacataccagctgactgcttcttccctaaatagttattagATAGTTTGGAGCTCTGctttgggtcaatgtcctgttgtaggaggaaattggctccaattaagcgccgtccacagggtatggcatgctGTTGCAAAATAGAGtcatagccttccttcttcaagatcccttttaccctgtacaaat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2175340 lncRNA downstream 31063 11240834 ~ 11241148 (-) True G1901948
TU2175318 lncRNA downstream 65032 11195568 ~ 11207179 (-) True G1901927
TU2175315 lncRNA downstream 78633 11193175 ~ 11193578 (-) True G1901925
TU2175311 lncRNA downstream 79452 11190675 ~ 11192759 (-) False G1901922
TU2175251 lncRNA downstream 162794 11109122 ~ 11109417 (-) True G1901874
TU2175590 lncRNA upstream 157630 11430134 ~ 11430370 (-) True G1902181
TU2175817 lncRNA upstream 244345 11516849 ~ 11517056 (-) True G1902380
TU2175831 lncRNA upstream 268362 11540866 ~ 11541201 (-) True G1902394
TU2175847 lncRNA upstream 278139 11550643 ~ 11551029 (-) True G1902404
TU2175849 lncRNA upstream 287824 11560328 ~ 11560638 (-) True G1902406
XM_021582225.2 mRNA downstream 224354 11046623 ~ 11047857 (-) True fbxo36a
XM_021582221.2 mRNA downstream 226663 11034019 ~ 11045548 (-) False LOC110503737
XM_036961236.1 mRNA downstream 226663 11034019 ~ 11045548 (-) True LOC110503737
XM_021582222.2 mRNA downstream 227661 11034019 ~ 11044550 (-) False LOC110503737
XM_021582224.2 mRNA downstream 244330 10993363 ~ 11027881 (-) False LOC110503738
XM_036961327.1 mRNA upstream 141343 11413847 ~ 11428871 (-) False daw1
XM_036961328.1 mRNA upstream 141343 11413847 ~ 11428873 (-) True daw1
XM_036961054.1 mRNA upstream 180863 11453367 ~ 11478283 (-) False LOC110503748
XM_036961053.1 mRNA upstream 180863 11453367 ~ 11478285 (-) False LOC110503748
XM_021582249.2 mRNA upstream 180863 11453367 ~ 11478286 (-) False LOC110503748
TU2175312 other downstream 79452 11190675 ~ 11192759 (-) True G1901922
TU2175111 other downstream 354119 10916421 ~ 10918092 (-) False LOC110503734
TU2175110 other downstream 354277 10916194 ~ 10917934 (-) False LOC110503734
TU2175605 other upstream 180900 11453404 ~ 11455158 (-) False LOC110503748
TU2175607 other upstream 180900 11453404 ~ 11461047 (-) True LOC110503748
TU2176372 other upstream 695338 11967842 ~ 12052648 (-) True G1902875
TU2176356 other upstream 707307 11979811 ~ 11980462 (-) True LOC110503324
TU2177124 other upstream 1444946 12717450 ~ 12723997 (-) False LOC110503775

Expression Profile