RNA id: TCONS_00053459


Basic Information

Item Value
RNA id TCONS_00053459
length 1177
lncRNA type antisense
GC content 0.38
exon number 3
gene id XLOC_027126
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9623291 ~ 9634704 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATTAATGAAATAAACACGCACAGGGTGGACGCACAGTCAGTCGAGTGAACACTGAAGACAGATTAAGGGGATTTCTATGATATTCCAGGATATTTTACAACAGATTTGACTTTGTGATTGTCTCGGCCAGCAGAAGATCGAGATCAGCTTTAACCTGATGGAGTAAAACAGTAATGAAGATGTAAAGCTCTGAGTCTCTGGATGGTTCAGGATGGATGAGTCTCTGGCTTCTACAGACCTGTGATGACCATTCATTTCCAGCACAGGTTAAACCACAGTCAAACTTCATGAGGACTGATCATTCATCATGCATTTACGGATGTGTCGGTTAAACGGTTTTGGTGTTGTCGTGGCAACAGGCGACCGTCATGAAGCTGAGACGCATACGCCGCCTAGTGGACCTGATGGAGAACTGCGTTTGCTGGCAATACTCCATTACTTTGTGCTCTGGGCAAAATAATTTGACGAGACATAAGTGTGAGAATTGGAGATTCATATTCATAAATTGGCATCTAATCAAACTAAtctctgatttatttattcaggAGCAGAATCATGTTGAGTGAACGCATCAAAACTGGACAAAATATCTTCTAGTACTCTTTTAATGTGTCTTCGTGTCAAGTTTGTTTCACTTTTGTCTTTGATGATGTTAATCACTTGGTTGACTAATTTAAGTTGCTGAATCACTGTTGGCAGATTTAAGCAGCATTTGTAGTAAACTTTGACTGATTACTGAATGCATACGACATGTTTCGACAAATAAAGTCTGTGTTATATAATGAATATTAATCATTTGTTTGCGTTTATAACATAAGCTTTATTTATTACAGAAAGATGCATTAGGGTCAGATCAGTGTTTCAGCTCCATCTTGTGGACAATAAGTGGATCTGCATTAATACTTGAAACTGAATTACTAAGACATTTTTTCCATTAGGAGAAATCCTGATCCTGAAGATCCACTTTCCAGAGTGAAGCTCCAACCTGATGAAAACACCTGAGGCTTTTAATTAAGGACTTTCAGCAAACGAGAAGCTTCAAGGCAAATGTGTGACAAACTCTGTAATtcagatgatgataataaaagatTGATTTGACTAAACTGATGATGCTTTTACAAATCGTGTATGTGTTTCACTGTGAGTttgagttaataaaaagtgatttaaaagta

Function

GO:

id name namespace
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0004361 glutaryl-CoA dehydrogenase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000140950

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053457 lncRNA upstream 7399 9614393 ~ 9616062 (+) True XLOC_027125
TCONS_00053446 lncRNA upstream 150517 9472002 ~ 9472944 (+) True XLOC_027119
TCONS_00057618 lncRNA upstream 270829 9346919 ~ 9352632 (+) True XLOC_027116
TCONS_00057616 lncRNA upstream 276758 9340827 ~ 9346703 (+) False XLOC_027115
TCONS_00057622 lncRNA downstream 3591 9630943 ~ 9634704 (+) False XLOC_027126
TCONS_00053460 lncRNA downstream 3600 9630952 ~ 9634704 (+) False XLOC_027126
TCONS_00053461 lncRNA downstream 3606 9630958 ~ 9634704 (+) False XLOC_027126
TCONS_00057623 lncRNA downstream 3627 9630979 ~ 9634704 (+) True XLOC_027126
TCONS_00057624 lncRNA downstream 99443 9726795 ~ 9730672 (+) True XLOC_027129
TCONS_00053455 mRNA upstream 3904 9612608 ~ 9619557 (+) False XLOC_027125
TCONS_00053454 mRNA upstream 4189 9612574 ~ 9619272 (+) False XLOC_027125
TCONS_00053456 mRNA upstream 4273 9612640 ~ 9619188 (+) False XLOC_027125
TCONS_00053452 mRNA upstream 11586 9609905 ~ 9611875 (+) False XLOC_027124
TCONS_00053453 mRNA upstream 11957 9609945 ~ 9611504 (+) True XLOC_027124
TCONS_00053462 mRNA downstream 42365 9669717 ~ 9690419 (+) True XLOC_027127
TCONS_00053463 mRNA downstream 52488 9679840 ~ 9724792 (+) True XLOC_027128
TCONS_00053464 mRNA downstream 209113 9836465 ~ 9843836 (+) True XLOC_027130
TCONS_00053466 mRNA downstream 283691 9911043 ~ 10002050 (+) False XLOC_027132
TCONS_00053465 mRNA downstream 283691 9911043 ~ 10002050 (+) False XLOC_027132
TCONS_00053451 other upstream 24761 9592531 ~ 9598700 (+) True XLOC_027123
TCONS_00053421 other upstream 1119660 8503687 ~ 8503801 (+) True XLOC_027102
TCONS_00053415 other upstream 1488751 8134594 ~ 8134710 (+) True XLOC_027099
TCONS_00053390 other upstream 2208024 7415337 ~ 7415437 (+) True XLOC_027085
TCONS_00053383 other upstream 2459587 7163758 ~ 7163874 (+) True XLOC_027083
TCONS_00053480 other downstream 1079403 10706755 ~ 10713584 (+) False XLOC_027140
TCONS_00053484 other downstream 1125388 10752740 ~ 10763285 (+) False XLOC_027142
TCONS_00053515 other downstream 1938688 11566040 ~ 11566156 (+) True XLOC_027157
TCONS_00053520 other downstream 2096878 11724230 ~ 11729130 (+) True XLOC_027159
TCONS_00053538 other downstream 2664933 12292285 ~ 12301995 (+) False XLOC_027168

Expression Profile

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