RNA id: TU2177064


Basic Information

Item Value
RNA id TU2177064
length 911
lncRNA type read_through
GC content 0.44
exon number 3
gene id G1903481
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 12637922 ~ 12703131 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACTGTCAATACAGTGGTCTTGCCTTCACACTCACTTCAAGCACAACGGAAAAACCTGTGCTAAAATGATTCTGTGAGCGTAACTTCTCGATTTTATTTagataatatatttattttaattctATACATAGGCCTAAAACACAGATTAAGCGTTGCGTTCCATGAAAGGGGCTGATAGTAGCATATTCCGTGAAAGTAGGCAAGTAAAGTTAGGCTACAGGTAAAGCTGGCAAACAGCGGCCTCGTAAGAGAAACCAAAGGACTCCACAAATCCCGCAAAAATGAGGTGAAAATTGAAGATTTCGCTTGAGAAATACGTCCGATTATAAAAgaAGAACGTAAAAGAGAACCATGATCAGAAGAAAAAGGAATGATGAACTTACCAGACATGTTGTAAAATgacctgagccctaggaccattcctcaggattacctggcatgatgactccttgctgtccccagtccacctggccatgctgctgctccagttaactgttctgcctgcggctatggaatcctgacctgttcaccggacgtgctacctttcccagacctgctgttttcaactctctagagatagCAGGAGCGGTAgggatactcttaatgatcggctatgaaaagccaactgacatttactcctaaggtgctgacttgctgcaccctcaacaactactgtgattattattatttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagacaccgtgcttctacacctgcatttcttgaattttggggttttaggctgggtttctgtacagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2177028 lncRNA downstream 27461 12610169 ~ 12610461 (-) True G1903452
TU2177007 lncRNA downstream 66085 12571329 ~ 12571837 (-) True LOC110503769
TU2177008 lncRNA downstream 66956 12570666 ~ 12570966 (-) False LOC110503769
TU2176750 lncRNA downstream 72026 12565639 ~ 12565896 (-) True G1903223
TU2176739 lncRNA downstream 79720 12557991 ~ 12558202 (-) True G1903212
TU2177062 lncRNA upstream 879 12704010 ~ 12708491 (-) True G1903479
TU2177117 lncRNA upstream 6246 12709377 ~ 12709598 (-) True G1903523
TU2177173 lncRNA upstream 114058 12817189 ~ 12831695 (-) True G1903574
TU2177196 lncRNA upstream 158500 12861631 ~ 12933686 (-) True G1903595
TU2177199 lncRNA upstream 164582 12867713 ~ 12939238 (-) True G1903598
XM_036961911.1 mRNA downstream 41230 12570052 ~ 12596692 (-) False LOC110503769
XM_036961912.1 mRNA downstream 41230 12570052 ~ 12596692 (-) False LOC110503769
XM_036961927.1 mRNA downstream 209934 12423276 ~ 12427988 (-) True il4i1
XM_021582280.2 mRNA downstream 217941 12405983 ~ 12419981 (-) True LOC110503765
XM_036961925.1 mRNA downstream 251858 12378904 ~ 12386064 (-) True LOC110503763
XM_021582289.2 mRNA upstream 13154 12716285 ~ 12724009 (-) False LOC110503775
XM_021582290.2 mRNA upstream 13154 12716285 ~ 12724009 (-) False LOC110503775
XM_021582293.2 mRNA upstream 67726 12770857 ~ 12775243 (-) True LOC110503777
XR_002470517.2 mRNA upstream 84176 12787307 ~ 12794824 (-) False LOC110503783
XR_002470516.2 mRNA upstream 84176 12787307 ~ 12796055 (-) True LOC110503783
TU2176372 other downstream 585274 11967842 ~ 12052648 (-) True G1902875
TU2176356 other downstream 657460 11979811 ~ 11980462 (-) True LOC110503324
TU2175607 other downstream 1176875 11453404 ~ 11461047 (-) True LOC110503748
TU2175605 other downstream 1182764 11453404 ~ 11455158 (-) False LOC110503748
TU2175312 other downstream 1445163 11190675 ~ 11192759 (-) True G1901922
TU2177124 other upstream 14319 12717450 ~ 12723997 (-) False LOC110503775
TU2177125 other upstream 14319 12717450 ~ 12718779 (-) True LOC110503775
TU2178084 other upstream 1013519 13716650 ~ 13719451 (-) True rabx5
TU2178133 other upstream 1054697 13757828 ~ 13758644 (-) True G1904408
TU2178616 other upstream 1339839 14042970 ~ 14043449 (-) True G1904846

Expression Profile