RNA id: TU2177969


Basic Information

Item Value
RNA id TU2177969
length 1007
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G1904260
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 13555267 ~ 13558398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCTTGTATAGCGATCCGTCTATTTGTCTGGTTTTGTCGATAAGTATAATTGTTGAGGAATATATATCACCTTATATGCATTAACTATTAACGGTGGAGCAACTGGACATGCTTAGTTGTCTGCTAGCAAGTGTGACAACAGTGAAGAAGACTCACCACGCGTTAGCTACAATGTATGTCCCGTAGCAACGACGAACGCTTGTTTGTCTAGATAGGTACTGTAGCTAGCGTAGCAGCTACGGTTAGTCAGTAACTATCCGCTACTTATTATTTGCTATACACTAATGTTATTGCCAGCTATATGCAGGCTTAACTTAGACAACAAAGTTTTATTTTTGACCGGACCAAGATCAGCAAGTGATACTTGCAAACTAAGTATCGTTAGCTATGAATAGCTAGCTATTTTGCTACTTTCTTTGCTAATTGTATAACAAGCTAATAGTCTGTTTTGTAGCTGAATGATCGATGGTACTCACTGTAAACAGAAGGGTTTTCAAGTACCTATTTTCTGAATACTTCTTTCACATTAGCCACCACAATGAGATTAAAGACATCATTACTCAAGGAACCAAAACACAAAGAGCTTGTGAGCTGTGTGGGCTGGACCACTACAGACGAGTTGTACTCCTGCAGTGAGGACCACCAGATCCAAAGATAGAACCTGCTGACCAGtgagatcagcctggtggtgaaGGTGCAGGAGGACCTCTTCCCCATTGACCTGCACTGGTTCCCCAAGACGGTGGGAGGCAAGAAGCAGGCCCAGGCCGAGATCTTTGTGCTCACCAGTACTGACAGCAAGTTACCAATAATGATTTTCTCGTAAGAGATTTTGATAACCAtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2177968 lncRNA downstream 8222 13546481 ~ 13547045 (-) True LOC110503789
TU2178045 lncRNA downstream 37822 13517070 ~ 13517445 (-) True G1904331
TU2177960 lncRNA downstream 40452 13475813 ~ 13514815 (-) True LOC110503790
TU2178022 lncRNA downstream 81944 13473096 ~ 13473323 (-) True G1904308
TU2178015 lncRNA downstream 89128 13465891 ~ 13466139 (-) True G1904301
TU2177962 lncRNA upstream 31873 13590271 ~ 13593563 (-) True LOC110503327
TU2178099 lncRNA upstream 123797 13682195 ~ 13682431 (-) True G1904377
TU2178101 lncRNA upstream 126292 13684690 ~ 13684979 (-) True G1904379
TU2178105 lncRNA upstream 133557 13691955 ~ 13692200 (-) True G1904383
TU2178106 lncRNA upstream 138584 13696982 ~ 13697375 (-) True G1904384
XR_005039404.1 mRNA downstream 97 13546337 ~ 13555170 (-) False LOC110503789
XM_036961068.1 mRNA downstream 9033 13475481 ~ 13546234 (-) False LOC110503790
XM_021582321.2 mRNA downstream 117714 13424728 ~ 13437553 (-) False LOC110503787
XM_021582322.2 mRNA downstream 117714 13424728 ~ 13437553 (-) False LOC110503787
XM_021582311.2 mRNA downstream 518828 12952684 ~ 13036439 (-) True LOC110503778
XM_036961069.1 mRNA upstream 31469 13589867 ~ 13590789 (-) False LOC110503327
XM_021582332.2 mRNA upstream 35544 13593942 ~ 13607211 (-) True kpna4
XM_036961285.1 mRNA upstream 55407 13613805 ~ 13664670 (-) False LOC110503795
XM_036961283.1 mRNA upstream 55407 13613805 ~ 13665732 (-) False LOC110503795
XM_036961284.1 mRNA upstream 55407 13613805 ~ 13665755 (-) False LOC110503795
TU2177124 other downstream 831270 12717450 ~ 12723997 (-) False LOC110503775
TU2177125 other downstream 836488 12717450 ~ 12718779 (-) True LOC110503775
TU2176372 other downstream 1502619 11967842 ~ 12052648 (-) True G1902875
TU2176356 other downstream 1574805 11979811 ~ 11980462 (-) True LOC110503324
TU2175607 other downstream 2094220 11453404 ~ 11461047 (-) True LOC110503748
TU2178084 other upstream 158252 13716650 ~ 13719451 (-) True rabx5
TU2178133 other upstream 199430 13757828 ~ 13758644 (-) True G1904408
TU2178616 other upstream 484572 14042970 ~ 14043449 (-) True G1904846
TU2178650 other upstream 531324 14089722 ~ 14142728 (-) True G1904877
TU2178696 other upstream 621665 14180063 ~ 14214520 (-) True G1904919

Expression Profile