RNA id: TU2178152


Basic Information

Item Value
RNA id TU2178152
length 201
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G1904423
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 13781341 ~ 13786197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctgacaaagacatgaggggaaacagaaggttaaatacacaacaggtaatgaatgggattgaaaacaggtgtgtgggaagacaagacaaaaccaatggaaaatgaaaaatggatcaatgatggctagaagaccggtgacgtcgaacgccgagcaccgcccgaacaaggagaggcaacgacttcggtagaagtcgtgacac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2178123 lncRNA downstream 39822 13741198 ~ 13741519 (-) True G1904398
TU2178120 lncRNA downstream 40787 13734759 ~ 13740554 (-) True G1904396
TU2178117 lncRNA downstream 51076 13730028 ~ 13730265 (-) True G1904393
TU2178115 lncRNA downstream 53279 13727785 ~ 13728062 (-) True G1904391
TU2178113 lncRNA downstream 54691 13726407 ~ 13726650 (-) True G1904389
TU2178216 lncRNA upstream 85396 13871593 ~ 13872018 (-) True G1904486
TU2178598 lncRNA upstream 225961 14012158 ~ 14012456 (-) True G1904829
TU2178606 lncRNA upstream 242574 14028771 ~ 14029064 (-) True G1904836
TU2178608 lncRNA upstream 244771 14030968 ~ 14031172 (-) True G1904838
TU2178611 lncRNA upstream 246961 14033158 ~ 14033476 (-) True G1904841
NM_001160674.1 mRNA downstream 61894 13717967 ~ 13719447 (-) False rabx5
XM_036961191.1 mRNA downstream 74199 13702362 ~ 13707142 (-) True LOC110503800
XM_021582337.2 mRNA downstream 74200 13702362 ~ 13707141 (-) False LOC110503800
XM_021582338.2 mRNA downstream 74201 13702362 ~ 13707140 (-) False LOC110503800
XM_021582333.2 mRNA downstream 114866 13613805 ~ 13666475 (-) True LOC110503795
XM_021581696.2 mRNA upstream 25455 13811652 ~ 13812593 (-) True LOC110503330
XM_021581699.2 mRNA upstream 101322 13887519 ~ 13888439 (-) True LOC110503333
XM_021581700.2 mRNA upstream 109088 13895285 ~ 13896205 (-) True LOC110503334
XM_036961074.1 mRNA upstream 116842 13903039 ~ 13903959 (-) True LOC118943997
XM_021581701.2 mRNA upstream 127160 13913357 ~ 13914277 (-) True LOC110503335
TU2178133 other downstream 22697 13757828 ~ 13758644 (-) True G1904408
TU2178084 other downstream 61890 13716650 ~ 13719451 (-) True rabx5
TU2177124 other downstream 1057344 12717450 ~ 12723997 (-) False LOC110503775
TU2177125 other downstream 1062562 12717450 ~ 12718779 (-) True LOC110503775
TU2176372 other downstream 1728693 11967842 ~ 12052648 (-) True G1902875
TU2178616 other upstream 256773 14042970 ~ 14043449 (-) True G1904846
TU2178650 other upstream 303525 14089722 ~ 14142728 (-) True G1904877
TU2178696 other upstream 393866 14180063 ~ 14214520 (-) True G1904919
TU2179185 other upstream 833466 14619663 ~ 14621372 (-) False G1905348
TU2179186 other upstream 833466 14619663 ~ 14621372 (-) True G1905348

Expression Profile