RNA id: TU2178718


Basic Information

Item Value
RNA id TU2178718
length 1190
lncRNA type intronic
GC content 0.46
exon number 2
gene id G1904941
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 14225799 ~ 14227143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctcagtctaacctgtctatctctgtctgtctctcagtctaacctgtccatctctgtctgtctctcagtctaacctgtctatctctgtctgtctctcagtctaaactgtctatctctgtctctcggtctagcttgtctatctctgtctgtctctccgtctatccaaTCTATTTCAttctaacgtgtctgtctgtctctgtctaacctgtctgtctctctcagtctaacctgtccgtctctgtctgtctttcagtctaacctgtccatctctgtctgtctctcagtctaaccgggctgtctctgtctgtctctctgtctaacctgtctatctcagtctgtctcagtctaacctgtctatctctgtctgtctcagtctaacctgtctgtctctgtctgtctctcagtctaacctgtctttctctgtctgtctctcagtctatcctgtctatctctgtctgtctctgtctaacctgtctgtctctcagtctaacctgtctgtctctctctgtctctcagtctaacctgtctatctgtctcagtctaacctgtctgtctgtctcagtctaacgtgtctgtctctttctaacctgtctgtctctgtttgtctctcagtctaacctgtctgtctctgtctaacctgtctgtctctgtttgtctctcagtctaacctgtctgtctctcagtctaacctgtctatgtctgtctctcagtctaacctgtctatctctgtctctcagtctatcctgtctatctcagtctaacctgtctatctctgtctctcagtctatcctgtctatctcagtctaacctgtctatctctgtctgactcagtctaacctgtctatctctctctgtctcagtctaacctgtctatctctgtctgtctccgtctaacctgtctatctctgtctgtctctcagtctaacctgtctgtctatcacagtctatcctgtctatctctgtctgtctctcagtctatcctgtctatctctgtctgtctctcagtctaccctgtctgtctctgtctgtctctcagtctaacctgtctgtctctcagtctaacatgtctatctctgtctgtctctcaatctatcctgtctatctctgtctgtctctgtctaacctgtctgtctctcagtctaacctgtctgtctctgtctgtctctgtctaacctgtctatttctgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2178716 lncRNA downstream 2487 14223082 ~ 14223312 (-) True G1904939
TU2178715 lncRNA downstream 2949 14222622 ~ 14222850 (-) True G1904938
TU2178712 lncRNA downstream 8143 14217410 ~ 14217656 (-) True G1904935
TU2178711 lncRNA downstream 8448 14217129 ~ 14217351 (-) True G1904934
TU2178694 lncRNA downstream 45993 14179503 ~ 14179806 (-) True G1904918
TU2179055 lncRNA upstream 177838 14404981 ~ 14405345 (-) True LOC110503811
TU2179083 lncRNA upstream 244509 14471652 ~ 14471878 (-) True G1905279
TU2179103 lncRNA upstream 284738 14511881 ~ 14512565 (-) True G1905299
TU2179104 lncRNA upstream 287118 14514261 ~ 14514492 (-) True G1905300
TU2179105 lncRNA upstream 287406 14514549 ~ 14514754 (-) True G1905301
XM_021582344.2 mRNA downstream 199752 14021980 ~ 14026047 (-) True LOC110503806
XM_021582342.2 mRNA downstream 206585 14015443 ~ 14019214 (-) False aamdc
XM_021582343.2 mRNA downstream 206585 14015443 ~ 14019214 (-) True aamdc
XR_005039443.1 mRNA downstream 226122 13999529 ~ 13999677 (-) True LOC118944122
XR_005039441.1 mRNA downstream 226859 13998794 ~ 13998940 (-) True LOC118944120
XM_036961223.1 mRNA upstream 177618 14404761 ~ 14420983 (-) False LOC110503811
XM_036961222.1 mRNA upstream 177618 14404761 ~ 14431484 (-) False LOC110503811
XM_036961220.1 mRNA upstream 177618 14404761 ~ 14454378 (-) False LOC110503811
XM_036961221.1 mRNA upstream 177618 14404761 ~ 14465943 (-) False LOC110503811
XM_036961218.1 mRNA upstream 177618 14404761 ~ 14512956 (-) False LOC110503811
TU2178696 other downstream 11279 14180063 ~ 14214520 (-) True G1904919
TU2178650 other downstream 83071 14089722 ~ 14142728 (-) True G1904877
TU2178616 other downstream 182350 14042970 ~ 14043449 (-) True G1904846
TU2178133 other downstream 467155 13757828 ~ 13758644 (-) True G1904408
TU2178084 other downstream 506348 13716650 ~ 13719451 (-) True rabx5
TU2179185 other upstream 392520 14619663 ~ 14621372 (-) False G1905348
TU2179186 other upstream 392520 14619663 ~ 14621372 (-) True G1905348
TU2179145 other upstream 395052 14622195 ~ 14655274 (-) False G1905324
TU2179146 other upstream 395052 14622195 ~ 14655274 (-) True G1905324
TU2179616 other upstream 713547 14940690 ~ 14941172 (-) True G1905737

Expression Profile