RNA id: TU2179105



Basic Information


Item Value
RNA id TU2179105
length 206
lncRNA type intronic
GC content 0.56
exon number 1
gene id G1905301
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 14514549 ~ 14514754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tacttagtgtggtccttttcccacctgcgttgtgggatagtgtttgtgtttagtgctATGTGCACTACGAACTTTGGCGGGAGTCGCCAAGGAGTATAGGAGGACAGTGACGACGCCGGGGTCCGCggccacagaaaccccaacaTTTCGGTCGAGGCaaggagagagccagagaccgTCGGGGAGTCGatggagcagtgtgagga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2179104 lncRNA downstream 57 14514261 ~ 14514492 (-) True G1905300
TU2179103 lncRNA downstream 1984 14511881 ~ 14512565 (-) True G1905299
TU2179083 lncRNA downstream 42671 14471652 ~ 14471878 (-) True G1905279
TU2179055 lncRNA downstream 109204 14404981 ~ 14405345 (-) True LOC110503811
TU2178718 lncRNA downstream 287406 14225799 ~ 14227143 (-) True G1904941
TU2179112 lncRNA upstream 11660 14526414 ~ 14531382 (-) True G1905308
TU2179126 lncRNA upstream 27368 14542122 ~ 14549938 (-) True G1905321
TU2179187 lncRNA upstream 102407 14617161 ~ 14619409 (-) False G1905349
TU2179188 lncRNA upstream 102407 14617161 ~ 14619409 (-) False G1905349
TU2179189 lncRNA upstream 102407 14617161 ~ 14619409 (-) True G1905349
XM_036961218.1 mRNA downstream 1593 14404761 ~ 14512956 (-) False LOC110503811
XM_036961221.1 mRNA downstream 48606 14404761 ~ 14465943 (-) False LOC110503811
XM_036961220.1 mRNA downstream 60171 14404761 ~ 14454378 (-) False LOC110503811
XM_036961222.1 mRNA downstream 83065 14404761 ~ 14431484 (-) False LOC110503811
XM_036961223.1 mRNA downstream 93566 14404761 ~ 14420983 (-) False LOC110503811
XM_021582361.2 mRNA upstream 32963 14547717 ~ 14548908 (-) False LOC110503815
XM_021582360.2 mRNA upstream 32963 14547717 ~ 14549440 (-) True LOC110503815
XM_021582358.2 mRNA upstream 52262 14567016 ~ 14585375 (-) True LOC110503814
XM_021582363.2 mRNA upstream 72186 14586940 ~ 14591929 (-) True kbtbd3
XM_021582364.2 mRNA upstream 77277 14592031 ~ 14597730 (-) True LOC110503819
TU2178696 other downstream 300029 14180063 ~ 14214520 (-) True G1904919
TU2178650 other downstream 371821 14089722 ~ 14142728 (-) True G1904877
TU2178616 other downstream 471100 14042970 ~ 14043449 (-) True G1904846
TU2178133 other downstream 755905 13757828 ~ 13758644 (-) True G1904408
TU2178084 other downstream 795098 13716650 ~ 13719451 (-) True rabx5
TU2179185 other upstream 104909 14619663 ~ 14621372 (-) False G1905348
TU2179186 other upstream 104909 14619663 ~ 14621372 (-) True G1905348
TU2179145 other upstream 107441 14622195 ~ 14655274 (-) False G1905324
TU2179146 other upstream 107441 14622195 ~ 14655274 (-) True G1905324
TU2179616 other upstream 425936 14940690 ~ 14941172 (-) True G1905737

Expression Profile