RNA id: TU2179112


Basic Information

Item Value
RNA id TU2179112
length 206
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G1905308
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 14526414 ~ 14531382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttgccttgtctcttagctcgttcacagctttgtggaagttacctgtggcgctgatgtttaggccgaggtatgtatcgtttttttgtgtgctctaggttAACGATGTCTAGATGGAATTCGTATtagtggtcctggcaactggaccttttttggaacaccttTATTTTTGTAttcctgagatttactgtcagggcccactCACac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2179105 lncRNA downstream 11660 14514549 ~ 14514754 (-) True G1905301
TU2179104 lncRNA downstream 11922 14514261 ~ 14514492 (-) True G1905300
TU2179103 lncRNA downstream 13849 14511881 ~ 14512565 (-) True G1905299
TU2179083 lncRNA downstream 54536 14471652 ~ 14471878 (-) True G1905279
TU2179055 lncRNA downstream 121069 14404981 ~ 14405345 (-) True LOC110503811
TU2179126 lncRNA upstream 10740 14542122 ~ 14549938 (-) True G1905321
TU2179187 lncRNA upstream 85779 14617161 ~ 14619409 (-) False G1905349
TU2179188 lncRNA upstream 85779 14617161 ~ 14619409 (-) False G1905349
TU2179189 lncRNA upstream 85779 14617161 ~ 14619409 (-) True G1905349
TU2179190 lncRNA upstream 90298 14621680 ~ 14621894 (-) True G1905350
XM_036961219.1 mRNA downstream 6787 14404761 ~ 14519627 (-) False LOC110503811
XM_036961218.1 mRNA downstream 13458 14404761 ~ 14512956 (-) False LOC110503811
XM_036961221.1 mRNA downstream 60471 14404761 ~ 14465943 (-) False LOC110503811
XM_036961220.1 mRNA downstream 72036 14404761 ~ 14454378 (-) False LOC110503811
XM_036961222.1 mRNA downstream 94930 14404761 ~ 14431484 (-) False LOC110503811
XM_021582361.2 mRNA upstream 16335 14547717 ~ 14548908 (-) False LOC110503815
XM_021582360.2 mRNA upstream 16335 14547717 ~ 14549440 (-) True LOC110503815
XM_021582358.2 mRNA upstream 35634 14567016 ~ 14585375 (-) True LOC110503814
XM_021582363.2 mRNA upstream 55558 14586940 ~ 14591929 (-) True kbtbd3
XM_021582364.2 mRNA upstream 60649 14592031 ~ 14597730 (-) True LOC110503819
TU2178696 other downstream 311894 14180063 ~ 14214520 (-) True G1904919
TU2178650 other downstream 383686 14089722 ~ 14142728 (-) True G1904877
TU2178616 other downstream 482965 14042970 ~ 14043449 (-) True G1904846
TU2178133 other downstream 767770 13757828 ~ 13758644 (-) True G1904408
TU2178084 other downstream 806963 13716650 ~ 13719451 (-) True rabx5
TU2179185 other upstream 88281 14619663 ~ 14621372 (-) False G1905348
TU2179186 other upstream 88281 14619663 ~ 14621372 (-) True G1905348
TU2179145 other upstream 90813 14622195 ~ 14655274 (-) False G1905324
TU2179146 other upstream 90813 14622195 ~ 14655274 (-) True G1905324
TU2179616 other upstream 409308 14940690 ~ 14941172 (-) True G1905737

Expression Profile