RNA id: TU2179643


Basic Information

Item Value
RNA id TU2179643
length 457
lncRNA type intronic
GC content 0.45
exon number 1
gene id G1905762
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 14986591 ~ 14987047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtaataggattcaataataatcctgtattgacgctttgcttgtttgatggttcgtctgagggcatagtgtgatttcttataagcatctggattagtgtcccgctccttgaaagcggcagctctagtctTTAACACGATGaggatgttacctgtaatccatggcttctggttgggatatgtacgtacggtcactgtgggtacgacatcatcaatgcacttattgatgaagccgatgactgaggtggcatactcctcaatgccattggatgaatcacagaacatattccagtctgtgctagcaaaacagtccagtagagtagcatccgcgtcatctgaccacttccgtattgagcgagtcactggtacttcctgctttagtttttgcttgtaagcaggaatcagaaggattagctaacacaacgtgccattggaacacaggagtgatggttgctgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2179635 lncRNA downstream 9475 14976059 ~ 14977116 (-) False G1905756
TU2179636 lncRNA downstream 9475 14976413 ~ 14977116 (-) True G1905756
TU2179637 lncRNA downstream 10309 14976059 ~ 14976282 (-) False G1905756
TU2179621 lncRNA downstream 39139 14947226 ~ 14947452 (-) True G1905742
TU2179611 lncRNA downstream 60379 14925814 ~ 14926212 (-) True G1905732
TU2179645 lncRNA upstream 1211 14988258 ~ 14988491 (-) True G1905764
TU2179649 lncRNA upstream 6877 14993924 ~ 14994155 (-) True G1905768
TU2179652 lncRNA upstream 16356 15003403 ~ 15003644 (-) True G1905771
TU2179658 lncRNA upstream 25186 15012233 ~ 15012495 (-) True G1905777
TU2179688 lncRNA upstream 108412 15095459 ~ 15095955 (-) True G1905800
XM_021582383.2 mRNA downstream 72929 14878362 ~ 14913662 (-) True LOC110503831
XM_021582380.2 mRNA downstream 113065 14839172 ~ 14873526 (-) False LOC110503830
XM_021582381.2 mRNA downstream 113065 14839332 ~ 14873526 (-) True LOC110503830
XM_021582378.2 mRNA downstream 226418 14740571 ~ 14760173 (-) False rsf1a
XM_036961309.1 mRNA upstream 120332 15107379 ~ 15119221 (-) False LOC110503833
XM_036961308.1 mRNA upstream 120332 15107379 ~ 15135432 (-) False LOC110503833
XM_036961307.1 mRNA upstream 120332 15107379 ~ 15148479 (-) True LOC110503833
XM_021582386.2 mRNA upstream 165816 15152863 ~ 15167618 (-) False LOC110503834
XM_036961960.1 mRNA upstream 165816 15152863 ~ 15167618 (-) True LOC110503834
TU2179620 other downstream 40144 14945998 ~ 14946447 (-) True G1905741
TU2179616 other downstream 45419 14940690 ~ 14941172 (-) True G1905737
TU2179145 other downstream 331317 14622195 ~ 14655274 (-) False G1905324
TU2179146 other downstream 331317 14622195 ~ 14655274 (-) True G1905324
TU2179186 other downstream 365219 14619663 ~ 14621372 (-) True G1905348
TU2179661 other upstream 96262 15083309 ~ 15084752 (-) True G1905780
TU2179941 other upstream 269673 15256720 ~ 15257197 (-) True LOC110503349
TU2180019 other upstream 366893 15353940 ~ 15354573 (-) True G1906115
TU2180103 other upstream 513157 15500204 ~ 15500760 (-) True G1906198
TU2180125 other upstream 525312 15512359 ~ 15513093 (-) True G1906218

Expression Profile