RNA id: TU2179652


Basic Information

Item Value
RNA id TU2179652
length 242
lncRNA type intronic
GC content 0.49
exon number 1
gene id G1905771
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 15003403 ~ 15003644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgtgtgggtggaccaattcagtttgtctgtgatgtgtacgccgaggaacttaaaacttactaccctttccactactgttccatcgatgtggataggggggtgttccctctgctgtttcctgaagtccacaatcatctccttagttttgttgacgttgagtgtgaggttattttcctgacaccacactccgagggccctcacctcctccctgtaggccgtctcgtcgttgttggtaatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2179649 lncRNA downstream 9248 14993924 ~ 14994155 (-) True G1905768
TU2179645 lncRNA downstream 14912 14988258 ~ 14988491 (-) True G1905764
TU2179643 lncRNA downstream 16356 14986591 ~ 14987047 (-) True G1905762
TU2179635 lncRNA downstream 26287 14976059 ~ 14977116 (-) False G1905756
TU2179658 lncRNA upstream 8589 15012233 ~ 15012495 (-) True G1905777
TU2179688 lncRNA upstream 91815 15095459 ~ 15095955 (-) True G1905800
TU2179767 lncRNA upstream 208929 15212573 ~ 15212906 (-) True G1905875
TU2179804 lncRNA upstream 234540 15238184 ~ 15238424 (-) True G1905912
TU2179946 lncRNA upstream 244689 15248333 ~ 15248549 (-) True G1906046
XM_021582383.2 mRNA downstream 89741 14878362 ~ 14913662 (-) True LOC110503831
XM_021582380.2 mRNA downstream 129877 14839172 ~ 14873526 (-) False LOC110503830
XM_021582381.2 mRNA downstream 129877 14839332 ~ 14873526 (-) True LOC110503830
XM_021582378.2 mRNA downstream 243230 14740571 ~ 14760173 (-) False rsf1a
XM_036961309.1 mRNA upstream 103735 15107379 ~ 15119221 (-) False LOC110503833
XM_036961308.1 mRNA upstream 103735 15107379 ~ 15135432 (-) False LOC110503833
XM_036961307.1 mRNA upstream 103735 15107379 ~ 15148479 (-) True LOC110503833
XM_021582386.2 mRNA upstream 149219 15152863 ~ 15167618 (-) False LOC110503834
XM_036961960.1 mRNA upstream 149219 15152863 ~ 15167618 (-) True LOC110503834
TU2179620 other downstream 56956 14945998 ~ 14946447 (-) True G1905741
TU2179616 other downstream 62231 14940690 ~ 14941172 (-) True G1905737
TU2179145 other downstream 348129 14622195 ~ 14655274 (-) False G1905324
TU2179146 other downstream 348129 14622195 ~ 14655274 (-) True G1905324
TU2179186 other downstream 382031 14619663 ~ 14621372 (-) True G1905348
TU2179661 other upstream 79665 15083309 ~ 15084752 (-) True G1905780
TU2179941 other upstream 253076 15256720 ~ 15257197 (-) True LOC110503349
TU2180019 other upstream 350296 15353940 ~ 15354573 (-) True G1906115
TU2180103 other upstream 496560 15500204 ~ 15500760 (-) True G1906198
TU2180125 other upstream 508715 15512359 ~ 15513093 (-) True G1906218

Expression Profile