RNA id: TU2180298


Basic Information

Item Value
RNA id TU2180298
length 222
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1906388
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 15636363 ~ 15636584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cataagGACTGTGCGGGGGTAGGGAAGTTGCATGTGCCTTACTGAAAACATCAAGTAGGTCATGGTACTCAGGGGGAATGACAAGCATCCAAATCCTTGCTGACGTCCTGAGGAAGACATCTGGGGGAAGGCTGTGCTGCTTGAAGACAGTGGGAATGGCAAAATGGGCTCCAACCCATGATGGAGCTCGTGGTCCAGTCAATAACATGGTTATGTTTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2180297 lncRNA downstream 1101 15634900 ~ 15635262 (-) True G1906387
TU2180276 lncRNA downstream 29623 15606535 ~ 15606740 (-) True G1906366
TU2180245 lncRNA downstream 37672 15598426 ~ 15598691 (-) True G1906335
TU2180240 lncRNA downstream 42524 15593605 ~ 15593839 (-) True G1906330
TU2180227 lncRNA downstream 50971 15585168 ~ 15585392 (-) True G1906317
TU2180300 lncRNA upstream 1805 15638389 ~ 15638655 (-) True G1906390
TU2181801 lncRNA upstream 5178 15641762 ~ 15642032 (-) True G1907716
TU2181807 lncRNA upstream 7496 15644080 ~ 15644310 (-) True G1907722
TU2181811 lncRNA upstream 12092 15648676 ~ 15648900 (-) True G1907726
TU2181823 lncRNA upstream 28811 15665395 ~ 15666976 (-) True G1907734
XM_036962006.1 mRNA downstream 4876 15599083 ~ 15631487 (-) True LOC110503840
XM_021582394.2 mRNA downstream 7188 15599083 ~ 15629175 (-) False LOC110503840
XM_021582393.2 mRNA downstream 193191 15415537 ~ 15443172 (-) True LOC110503839
XM_036961079.1 mRNA downstream 337874 15252457 ~ 15298489 (-) False LOC110503349
XM_021582388.2 mRNA downstream 456585 15170940 ~ 15179778 (-) True LOC110503835
XM_021582397.2 mRNA upstream 17967 15654551 ~ 15664278 (-) False LOC110503841
XM_021582396.2 mRNA upstream 17967 15654551 ~ 15664281 (-) False LOC110503841
XM_021582398.2 mRNA upstream 17967 15654551 ~ 15664281 (-) False LOC110503841
XM_021582399.2 mRNA upstream 19166 15655750 ~ 15663835 (-) True LOC110503841
XM_036961228.1 mRNA upstream 41736 15678320 ~ 16026468 (-) False LOC110503843
TU2180125 other downstream 123270 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 135603 15500204 ~ 15500760 (-) True G1906198
TU2180019 other downstream 281790 15353940 ~ 15354573 (-) True G1906115
TU2179941 other downstream 379166 15256720 ~ 15257197 (-) True LOC110503349
TU2179661 other downstream 551611 15083309 ~ 15084752 (-) True G1905780
TU2181985 other upstream 400403 16036987 ~ 16044305 (-) True LOC110503846
TU2182062 other upstream 495406 16131990 ~ 16132562 (-) True G1907922
TU2182093 other upstream 522262 16158846 ~ 16161226 (-) True G1907951
TU2182802 other upstream 1641223 17277807 ~ 17278410 (-) True LOC118944080
TU2183897 other upstream 2795440 18432024 ~ 18434792 (-) False LOC110503924

Expression Profile