RNA id: TU2181917


Basic Information

Item Value
RNA id TU2181917
length 467
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1907806
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 15857809 ~ 15858786 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatagagggatggagagaaagaaataggatggagagaatGAAATAGGATGGAGATGCAGACTCCCTCCAAGTCTGCATCATCAGCAGTAGCGTCATCTCTAGGAAACATAAAAGGGAGgaaaagaaagaaagcgagagggaCAGAACGTGGACCTCTCTGATGTGATGTCCACTGGTTCTGTCAGCACCTCTGCTGCTTCGTAGCGTCTTCACTGTCGGCCCAAAACCAACCTGACGCTTTTCTTAGTGAGCTCTTTCTTTGTCCTTTTCTTCTGTCTTGAATTTGTAGTAACATgcagttgtgtttgtgtgttgtctgTGATGTGTCATGAGGTTTTATCTGTTTGTAAAAGTGCAGCTTTATGCAGGTTTACTGCAGGTGTCTGTATTTTTCTAGGTGTTTGTTTTTATATTCGTGCCGCTTTTGCTGCCCATTGCTGTCTCTcttcctgtctctctccctgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2181897 lncRNA downstream 31509 15826065 ~ 15826300 (-) True G1907795
TU2181865 lncRNA downstream 111969 15745550 ~ 15745840 (-) True G1907773
TU2181797 lncRNA downstream 112987 15678684 ~ 15744822 (-) True LOC110503843
TU2181823 lncRNA downstream 190833 15665395 ~ 15666976 (-) True G1907734
TU2181811 lncRNA downstream 208909 15648676 ~ 15648900 (-) True G1907726
TU2181873 lncRNA upstream 11962 15870748 ~ 15872916 (-) True G1907777
TU2181926 lncRNA upstream 30728 15889514 ~ 15941917 (-) True G1907815
TU2181946 lncRNA upstream 45277 15904063 ~ 15915117 (-) False G1907823
TU2181947 lncRNA upstream 45277 15904063 ~ 15911266 (-) False G1907823
TU2181939 lncRNA upstream 45886 15904672 ~ 15913980 (-) False G1907823
XM_021582396.2 mRNA downstream 193528 15654551 ~ 15664281 (-) False LOC110503841
XM_021582398.2 mRNA downstream 193528 15654551 ~ 15664281 (-) False LOC110503841
XM_021582397.2 mRNA downstream 193531 15654551 ~ 15664278 (-) False LOC110503841
XM_021582399.2 mRNA downstream 193974 15655750 ~ 15663835 (-) True LOC110503841
XM_036962006.1 mRNA downstream 226322 15599083 ~ 15631487 (-) True LOC110503840
XM_021582405.2 mRNA upstream 179082 16037868 ~ 16043576 (-) False LOC110503846
XM_036962005.1 mRNA upstream 179082 16037868 ~ 16044740 (-) False LOC110503846
XM_021582410.2 mRNA upstream 274378 16133164 ~ 16138513 (-) True slc46a1
XM_036961985.1 mRNA upstream 339260 16198046 ~ 16224497 (-) True LOC110503852
XM_021582413.2 mRNA upstream 368785 16227571 ~ 16232374 (-) False LOC110503854
TU2180125 other downstream 344716 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 357049 15500204 ~ 15500760 (-) True G1906198
TU2180019 other downstream 503236 15353940 ~ 15354573 (-) True G1906115
TU2179941 other downstream 600612 15256720 ~ 15257197 (-) True LOC110503349
TU2179661 other downstream 773057 15083309 ~ 15084752 (-) True G1905780
TU2181985 other upstream 178201 16036987 ~ 16044305 (-) True LOC110503846
TU2182062 other upstream 273204 16131990 ~ 16132562 (-) True G1907922
TU2182093 other upstream 300060 16158846 ~ 16161226 (-) True G1907951
TU2182802 other upstream 1419021 17277807 ~ 17278410 (-) True LOC118944080
TU2183897 other upstream 2573238 18432024 ~ 18434792 (-) False LOC110503924

Expression Profile