RNA id: TU2181873


Basic Information

Item Value
RNA id TU2181873
length 1517
lncRNA type intronic
GC content 0.46
exon number 5
gene id G1907777
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 15870748 ~ 15872916 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttccctccctctctcccctcctctctctctctctctctctttctctccctacctcccctgGTCGGTCAGCCCCAGTGTCCAGGTGTAGAGATATGCTGCAGGTAATTTCCTCTGCAGGTGagctagtctgtgtgtgtgttagatgaTATCTGCTCACCTGGTCCACCCCAGCCACAGAAGCAGTCTTTGTATATTCATTGTAGTGGGcagcacacacacccctccagcCAAGTCACCATCCAGCTAACGGATACATGTGACACCAGCCAGGTAGAGAAAGGGtcgggtgtgtgagagagggcaagagggagagattaagtgtgtgtttgtctatattgcgtgtgtctgtattgtgtgtgtgtgtctgcattgtgtgtgtctgcattgtgtgtgtgtgtgtgtgtgcgtctgcattgtgtgtgtgtgtgtctgcattgtgcgtgtgtgtgtctgcattgtgtgtgtctgcattgtgtgtgtctgcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacaggaagAGTTGGCAGCCTTTCTCTCCTCACCTGGACATTAGGTCCCACGGACGTTTTACTGGAGTGTGTTTCCAATCACCAGAGGAACGTGAAGAACGTCCGCTTGGggcttcgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcagccATAgggagagaaagaaatggagaaggatggagagaaagaaataaagaagggtggagagaaagaaataggatggagagaaagaaataggatagagagaaagaaataggatggagagaaagaaataggatggagagaaagaaataggatggggagaaagaaataggatggggagaaagaaatagagggatggagagaaagaaataggatggggagaaagaaatagagggatggagagaaagaaatagagggatggagagaaagaaagggatggagagaaagaaataggatggggagaaagaaataggatggggagaaagaaataggatggggagaaagaaatagagggatggagagaaagaaataggatggggagaaagaaatagagggatggagagaaagaaatagagggatggagagaaagaaagggatggagagaaagaaataggatggggagaaagaaatagagggatggagagaaagaaatagagggatggagagaaagaaagggatggagagaaagaaataggatggggagaaagaaataggatggggagaaagaaatagagggatggagagaaagaaatagagggatggagagaaagaaatagagggatggagagaaagaaatagagggatggggagaaagaaatagagggatggggagaaagaaatagagggatggagagaaagaaatagagggatggagagaaagaaatagagggatggagagaaagaaatagagggatggagagaaagaaatggagggatggagagaaataaatagagggatggggagaaagaaatagagggatggagagaaagaaatagagggatggggagagaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2181917 lncRNA downstream 11962 15857809 ~ 15858786 (-) True G1907806
TU2181897 lncRNA downstream 44448 15826065 ~ 15826300 (-) True G1907795
TU2181865 lncRNA downstream 124908 15745550 ~ 15745840 (-) True G1907773
TU2181797 lncRNA downstream 125926 15678684 ~ 15744822 (-) True LOC110503843
TU2181823 lncRNA downstream 203772 15665395 ~ 15666976 (-) True G1907734
TU2181926 lncRNA upstream 16598 15889514 ~ 15941917 (-) True G1907815
TU2181946 lncRNA upstream 31147 15904063 ~ 15915117 (-) False G1907823
TU2181947 lncRNA upstream 31147 15904063 ~ 15911266 (-) False G1907823
TU2181939 lncRNA upstream 31756 15904672 ~ 15913980 (-) False G1907823
TU2181941 lncRNA upstream 36986 15909902 ~ 15913544 (-) True G1907823
XM_021582396.2 mRNA downstream 206467 15654551 ~ 15664281 (-) False LOC110503841
XM_021582398.2 mRNA downstream 206467 15654551 ~ 15664281 (-) False LOC110503841
XM_021582397.2 mRNA downstream 206470 15654551 ~ 15664278 (-) False LOC110503841
XM_021582399.2 mRNA downstream 206913 15655750 ~ 15663835 (-) True LOC110503841
XM_036962006.1 mRNA downstream 239261 15599083 ~ 15631487 (-) True LOC110503840
XM_021582405.2 mRNA upstream 164952 16037868 ~ 16043576 (-) False LOC110503846
XM_036962005.1 mRNA upstream 164952 16037868 ~ 16044740 (-) False LOC110503846
XM_021582410.2 mRNA upstream 260248 16133164 ~ 16138513 (-) True slc46a1
XM_036961985.1 mRNA upstream 325130 16198046 ~ 16224497 (-) True LOC110503852
XM_021582413.2 mRNA upstream 354655 16227571 ~ 16232374 (-) False LOC110503854
TU2180125 other downstream 357655 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 369988 15500204 ~ 15500760 (-) True G1906198
TU2180019 other downstream 516175 15353940 ~ 15354573 (-) True G1906115
TU2179941 other downstream 613551 15256720 ~ 15257197 (-) True LOC110503349
TU2179661 other downstream 785996 15083309 ~ 15084752 (-) True G1905780
TU2181985 other upstream 164071 16036987 ~ 16044305 (-) True LOC110503846
TU2182062 other upstream 259074 16131990 ~ 16132562 (-) True G1907922
TU2182093 other upstream 285930 16158846 ~ 16161226 (-) True G1907951
TU2182802 other upstream 1404891 17277807 ~ 17278410 (-) True LOC118944080
TU2183897 other upstream 2559108 18432024 ~ 18434792 (-) False LOC110503924

Expression Profile