RNA id: TU2181947


Basic Information

Item Value
RNA id TU2181947
length 1050
lncRNA type intronic
GC content 0.43
exon number 4
gene id G1907823
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 15904063 ~ 15915117 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaagagaaaatggagagagagtgactgaatcaGAAAACGTAGagggagagtgactgaatgagaacgtagagagagtgactgaatgagaaaacgtagagagagagtgactgaatgagaaaatgtagagagtgtgactggaagagaaaagggagagagagtgactgaatgagaaaacatagagagagtgactgaatgagaaaacgtagagagagtgactgaatgagaacgtagagagagtgactgaatgagaacgtagagagagtgactgaatgagaaaatgtagagagtgtgactggaagagaaaagggagagagagtgactgaatgagaaaacgtagagagagtgactgaatgagaacgtagagagagtgactgaatgagaaaacatagagagagagtgactgaatgagaacgtagagagagtgactgaatgagaaaacgtagagagagtgactgaatgagaaaacgtagtggctgaatgagaaaacgtagagagagagtgactggaagagaaaacgtagagagtgactggaagagaaaacgtagagagtgactgaatgagaaaacgtagagtgtgtgactggaagagaaaagggagagagagtgactgaatgagaaaacgtagagagagagtgactgagtgagaaAACGTAGagtgagagtgactgaatgagaaaacgtagagagtgactgaatgagaaaacgtagagagagtgactgaatgagaaaatgtagagcgagtgactgaatgagaaaacgtagagagagtgactggaagagaaaacgtagagagagtgactgaatgagaaaacgtagagtgagagtgactgaatgagaaaacgtagagagtgtgactggaagagaaaacgtagagtgactgaatgagaaaacgtagttagtgtgactggaagagaaaacgtagagagtgactgaatgagaaaacgtagtTAGTGTGACTGGaatagaaaagagagagggaatgcgGAGTGAGAAGGATGCAGTGTGCTGTATTGGCTGACCCCTGGCCGTCCGGCCGAGGCTCTGATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2181873 lncRNA downstream 31147 15870748 ~ 15872916 (-) True G1907777
TU2181917 lncRNA downstream 45277 15857809 ~ 15858786 (-) True G1907806
TU2181897 lncRNA downstream 77763 15826065 ~ 15826300 (-) True G1907795
TU2181865 lncRNA downstream 158223 15745550 ~ 15745840 (-) True G1907773
TU2181797 lncRNA downstream 159241 15678684 ~ 15744822 (-) True LOC110503843
TU2181929 lncRNA upstream 36873 15948139 ~ 15948538 (-) True G1907817
TU2181989 lncRNA upstream 58345 15969611 ~ 16036859 (-) True G1907856
TU2182075 lncRNA upstream 193237 16104503 ~ 16104867 (-) True G1907934
TU2182080 lncRNA upstream 201140 16112406 ~ 16112761 (-) True G1907939
TU2182081 lncRNA upstream 203783 16115049 ~ 16115427 (-) True G1907940
XM_021582396.2 mRNA downstream 239782 15654551 ~ 15664281 (-) False LOC110503841
XM_021582398.2 mRNA downstream 239782 15654551 ~ 15664281 (-) False LOC110503841
XM_021582397.2 mRNA downstream 239785 15654551 ~ 15664278 (-) False LOC110503841
XM_021582399.2 mRNA downstream 240228 15655750 ~ 15663835 (-) True LOC110503841
XM_036962006.1 mRNA downstream 272576 15599083 ~ 15631487 (-) True LOC110503840
XM_021582405.2 mRNA upstream 126602 16037868 ~ 16043576 (-) False LOC110503846
XM_036962005.1 mRNA upstream 126602 16037868 ~ 16044740 (-) False LOC110503846
XM_021582410.2 mRNA upstream 221898 16133164 ~ 16138513 (-) True slc46a1
XM_036961985.1 mRNA upstream 286780 16198046 ~ 16224497 (-) True LOC110503852
XM_021582413.2 mRNA upstream 316305 16227571 ~ 16232374 (-) False LOC110503854
TU2180125 other downstream 390970 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 403303 15500204 ~ 15500760 (-) True G1906198
TU2180019 other downstream 549490 15353940 ~ 15354573 (-) True G1906115
TU2179941 other downstream 646866 15256720 ~ 15257197 (-) True LOC110503349
TU2179661 other downstream 819311 15083309 ~ 15084752 (-) True G1905780
TU2181985 other upstream 125721 16036987 ~ 16044305 (-) True LOC110503846
TU2182062 other upstream 220724 16131990 ~ 16132562 (-) True G1907922
TU2182093 other upstream 247580 16158846 ~ 16161226 (-) True G1907951
TU2182802 other upstream 1366541 17277807 ~ 17278410 (-) True LOC118944080
TU2183897 other upstream 2520758 18432024 ~ 18434792 (-) False LOC110503924

Expression Profile