RNA id: TU2182062


Basic Information

Item Value
RNA id TU2182062
length 573
RNA type TUCP
GC content 0.44
exon number 1
gene id G1907922
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 16131990 ~ 16132562 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgataaatacaatccacctgtgtgtaatcaagtctccatataaatgcacctgcactgtgatagtctgaggtccgtcaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtgtgTTCCttgatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacatggagaagactgatcagatatgcagccaagaggcccatgatcattctggatgaactgccgagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2182054 lncRNA downstream 743 16130812 ~ 16131247 (-) False G1907914
TU2182053 lncRNA downstream 743 16130971 ~ 16131247 (-) True G1907914
TU2182081 lncRNA downstream 16563 16115049 ~ 16115427 (-) True G1907940
TU2182080 lncRNA downstream 19229 16112406 ~ 16112761 (-) True G1907939
TU2182075 lncRNA downstream 27123 16104503 ~ 16104867 (-) True G1907934
TU2182104 lncRNA upstream 52473 16185035 ~ 16185488 (-) True G1907962
TU2182147 lncRNA upstream 130012 16262574 ~ 16264753 (-) True G1908004
TU2182213 lncRNA upstream 195147 16327709 ~ 16328139 (-) True G1908067
TU2182174 lncRNA upstream 328858 16461420 ~ 16476960 (-) True G1908029
TU2182360 lncRNA upstream 485410 16617972 ~ 16622138 (-) True G1908202
XM_036962005.1 mRNA downstream 87250 16037868 ~ 16044740 (-) False LOC110503846
XM_021582405.2 mRNA downstream 88414 16037868 ~ 16043576 (-) False LOC110503846
XM_021582400.2 mRNA downstream 103316 15678320 ~ 16028674 (-) False LOC110503843
XM_021582410.2 mRNA upstream 602 16133164 ~ 16138513 (-) True slc46a1
XM_036961985.1 mRNA upstream 65484 16198046 ~ 16224497 (-) True LOC110503852
XM_021582413.2 mRNA upstream 95009 16227571 ~ 16232374 (-) False LOC110503854
XM_036962007.1 mRNA upstream 95009 16227571 ~ 16234629 (-) True LOC110503854
XM_021582421.2 mRNA upstream 260714 16393276 ~ 16407374 (-) True LOC110503859
TU2181985 other downstream 87685 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 618897 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 631230 15500204 ~ 15500760 (-) True G1906198
TU2180019 other downstream 777417 15353940 ~ 15354573 (-) True G1906115
TU2179941 other downstream 874793 15256720 ~ 15257197 (-) True LOC110503349
TU2182093 other upstream 26284 16158846 ~ 16161226 (-) True G1907951
TU2182802 other upstream 1145245 17277807 ~ 17278410 (-) True LOC118944080
TU2183897 other upstream 2299462 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 2299462 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 2835500 18968062 ~ 18973230 (-) False LOC110503944

Expression Profile