RNA id: TU2182174


Basic Information

Item Value
RNA id TU2182174
length 1925
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G1908029
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 16461420 ~ 16476960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGTCACTGCGCTGCCAGCTGATCGCAGTGAGAAGCCGGTTTGAAGGGAGTTGGACTAGAGAGAACCAAGACGCAGCGATAGAGGGACTGGTTGGTTGGGGAACTGCTGGGAAACTGGAAAGTGAAACCTGGGGCGGTATCTTCGTTTTTACCGGTTAAGTTATAATGTATCGCACACTAATAGATACAAGGGTGATAGTTGAATAGTTGTAAGTGTATTTTAAACTTGAACTATTATAGATGTGTTTCGTCCAGGACTAGAACTGTCAAAATTGATTGAGAGAGTTAAGGTGTGGCTGCCTTTAAAACGGGGTTTCTTCTTCAAGACTTGCATCTGACCTAAATGCTTATGATAATAAAGCTTGATCATAGCTATATACAGTGAGAAGTAGCCTAGCTGATCGATTTTCAATATGAATGGCGCATTTGATAGAGGAAGCATTCGATTATACAACTAATAGTGCCGTCTCGACAAGGCTAATAAGCATTATTCTAAATATGACCGATGGAATCTATTCTGCTATTATTTGGATGATCATAACGAGTATTTAATAATTCGATGTATAATGCTTTGAAATGGACGTAGCAACTTTACAATCATATCGCAGCCCACAGATGGGTGGCAAGTCAACGGAGCTGTGGTGAGGAAGGCCTAGTCCATGATATAAGGTAATTCGATAATTGATAAAACATCTTTACatttttgaaatatatttttaaatcgtTTTCATTATGATGGAGCTGCTTGTAACTAGGCTACTGACATGTTGAGTCACACCGAGGAAAGAAGTTAGTCTAACCTACAGAAAAAAAGTAAATGCGTCTATGTTCATTTAAAAACTTTTAATTGTCTTAATGAGCGTGGAATAACCTTAACTGACTAGATTGAAGTAATCGACATTGTCTGCAACTAAAATATAAAATAGAGCGTGAAATGAGACCTATTGAGACTATTGCCAGAACCGTTACAAATATTGCAAATTGAATGTTCCAAATTATGTAATCAAATAGTTAACTTGCAGTGCCATTCGGACTATTTGTACTCTGGTCTGTAGGcggtgccttcactgccatattaccTAATTCAATACAGCAGTGTATTGAATATAAGATGTAAGAGTTTTTTCAAAGGCCATCTCATATAGACTAAACGTTAAATGTGTTGGTTTATGGACACTTCTATTGTGCGCATTCGTGGCCTATAGAGACAACGGGCGTGCCCATCAATTAGTCTACTTGTAAGAAAAAGAATGGGGCCAACGAGCTCAGAATAAGATTCGGTCATATTTAAAACTGAAACAAAATGTAAAAGATCAAGCTCATTGCCGTACTGTAAAATCGTTTTAAAATACCTATTCATAGATCATAGCTTTTGACTATACAGTTTTATCATTTAATAGTATGCTACTAGCCTAAAGAATAATGTGTAATGAACTTACTCATTATCTTCTCGTTATTTAGTTAGAGTAACTAACTGTAATTCCCTTTAATTCGACTTAAAGGAGAGGATTGCGAAGCAAATTTCTTTAAGGCCCCACCCTTTACAGAGAAACATGGATGTCGACGACAGTTTTCCCCGTAAGTTTCTtcctttcccctttccctcctctcctcatctctcattTTACGTTGATAAACCCTGATTTAAATGGAGAGAACCTGTAACCTACCCTATAAACTGGCTGGCAACACCCTAAAGATCAGACAGCAGGATCTTCATTCAAGCTCCCATGACATCTCCTTTCCCTTGATCAAGaTTCCACTGCCCACCCTGATGGCCAAAGAGACAGAAGATGTAGcctaatgtgtgtgtgcatctgttgtgtgtgtttatatgtgtgtattTTCGTACATGTTGCGTGGGTGCTCACTGGCTGACCCACAGcagttgtgtgtgtttatatgtgtgtttttgtacaTGTTG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2182213 lncRNA downstream 133281 16327709 ~ 16328139 (-) True G1908067
TU2182147 lncRNA downstream 196667 16262574 ~ 16264753 (-) True G1908004
TU2182104 lncRNA downstream 275932 16185035 ~ 16185488 (-) True G1907962
TU2182054 lncRNA downstream 330173 16130812 ~ 16131247 (-) False G1907914
TU2182053 lncRNA downstream 330173 16130971 ~ 16131247 (-) True G1907914
TU2182360 lncRNA upstream 141012 16617972 ~ 16622138 (-) True G1908202
TU2182394 lncRNA upstream 158677 16635637 ~ 16641190 (-) True G1908230
TU2182400 lncRNA upstream 170375 16647335 ~ 16647565 (-) True G1908235
TU2182438 lncRNA upstream 238206 16715166 ~ 16721539 (-) True G1908269
TU2182455 lncRNA upstream 242396 16719356 ~ 16776811 (-) True G1908285
XM_021582422.2 mRNA downstream 39139 16413685 ~ 16422281 (-) True aipl1
XM_021582421.2 mRNA downstream 54046 16393276 ~ 16407374 (-) True LOC110503859
XM_036962007.1 mRNA downstream 226791 16227571 ~ 16234629 (-) True LOC110503854
XM_021582413.2 mRNA downstream 229046 16227571 ~ 16232374 (-) False LOC110503854
XM_036961985.1 mRNA downstream 236923 16198046 ~ 16224497 (-) True LOC110503852
XM_021582423.2 mRNA upstream 29052 16506012 ~ 16515306 (-) True abhd15a
XM_021582426.2 mRNA upstream 78802 16555762 ~ 16558682 (-) False LOC110503865
XM_036961144.1 mRNA upstream 78802 16555762 ~ 16558682 (-) True LOC110503865
XM_036961143.1 mRNA upstream 82800 16559760 ~ 16591432 (-) True LOC110503864
XM_036961593.1 mRNA upstream 356558 16833518 ~ 16846062 (-) False LOC110503875
TU2182093 other downstream 300194 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 328858 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 417115 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 948327 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 960660 15500204 ~ 15500760 (-) True G1906198
TU2182802 other upstream 800847 17277807 ~ 17278410 (-) True LOC118944080
TU2183897 other upstream 1955064 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 1955064 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 2491102 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 2491102 18968062 ~ 18973230 (-) True LOC110503944

Expression Profile