RNA id: TU2182438


Basic Information

Item Value
RNA id TU2182438
length 813
lncRNA type intronic
GC content 0.38
exon number 3
gene id G1908269
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 16715166 ~ 16721539 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggagacttgattacacacaggtggattgtatttatcatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatattgtGTTGAGGACTTCCAAAGGGTgtactgcttttttttttttttgaaacttttttgttggtgtgtgtgtgtgttagaattgctttttgatatgttgtatatagttatttgcactgttgTATATAGTTAATTTCActaattcggccacttgggtacatttgggcaacttgtgtgggacacctgggtgacttcatgctaaatgccatgtagctcacccattcctgaagttatcagtctgaaactttgcacacctacagttgccctcttgtgttatccatcaaaattatctccagcatcctattctagtacatgtgaaagataCTACagcaataaaaaacagaaaacgtatgctctttctcttttcttccatcagatctactgtgttatattctcctacattcaatgaacatttccacaaacttcagaatgtttccattcaaatgataacaagaatatgcatatccttgcctctggggctgagctacaggcagttagattagggtatgcaaatctaactgcctgtagctcaggccctcaaggaaggatatgcatattcttgataccatttgttAGGAAtcactgaagtttgtggaaaagTGAATTTATTGCGGGAGAacaacacaatagatctggtagaagaaaagacaaagacaaaacaaccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2182400 lncRNA downstream 67601 16647335 ~ 16647565 (-) True G1908235
TU2182394 lncRNA downstream 73976 16635637 ~ 16641190 (-) True G1908230
TU2182360 lncRNA downstream 93028 16617972 ~ 16622138 (-) True G1908202
TU2182174 lncRNA downstream 238206 16461420 ~ 16476960 (-) True G1908029
TU2182213 lncRNA downstream 387027 16327709 ~ 16328139 (-) True G1908067
TU2182471 lncRNA upstream 29588 16751127 ~ 16796640 (-) True G1908301
TU2182442 lncRNA upstream 36564 16758103 ~ 16762041 (-) True G1908272
TU2182560 lncRNA upstream 115203 16836742 ~ 16837111 (-) True G1908373
TU2182648 lncRNA upstream 271973 16993512 ~ 16997485 (-) True LOC110503876
TU2182761 lncRNA upstream 509353 17230892 ~ 17233704 (-) True G1908551
XM_036961143.1 mRNA downstream 123734 16559760 ~ 16591432 (-) True LOC110503864
XM_021582426.2 mRNA downstream 156484 16555762 ~ 16558682 (-) False LOC110503865
XM_036961144.1 mRNA downstream 156484 16555762 ~ 16558682 (-) True LOC110503865
XM_021582423.2 mRNA downstream 199860 16506012 ~ 16515306 (-) True abhd15a
XM_021582422.2 mRNA downstream 292885 16413685 ~ 16422281 (-) True aipl1
XM_036961593.1 mRNA upstream 111979 16833518 ~ 16846062 (-) False LOC110503875
XM_021582449.2 mRNA upstream 111979 16833518 ~ 16857451 (-) False LOC110503875
XM_021582446.2 mRNA upstream 111979 16833518 ~ 16913656 (-) False LOC110503875
XM_036961594.1 mRNA upstream 111979 16833518 ~ 16913656 (-) False LOC110503875
XM_021582445.2 mRNA upstream 111979 16833518 ~ 16913657 (-) False LOC110503875
TU2182093 other downstream 553940 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 582604 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 670861 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 1202073 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 1214406 15500204 ~ 15500760 (-) True G1906198
TU2182802 other upstream 556268 17277807 ~ 17278410 (-) True LOC118944080
TU2183897 other upstream 1710485 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 1710485 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 2246523 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 2246523 18968062 ~ 18973230 (-) True LOC110503944

Expression Profile