RNA id: TU2183047


Basic Information

Item Value
RNA id TU2183047
length 239
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1908803
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17615257 ~ 17615495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccccccccaaacaaattCTATAACATTTATTTTCTGACAGATACACAATTTCTTTATGCATTGTCTTTGCCAAATTATATATTTATCAAAGACTTCAATGGTTTCACCAAATCCCAAATATAACAGAAGCTGACATTTGATCTATCTGATTTGCAAGCCTATATTTCCTGTTGAGTATACACCACCTGACTACCTGTGTTTCGTTGGCGAGTTCATCAGTGTCATAAGAGCAGTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2183035 lncRNA downstream 30468 17584524 ~ 17584789 (-) True G1908792
TU2183034 lncRNA downstream 31139 17583754 ~ 17584118 (-) True G1908791
TU2183032 lncRNA downstream 33139 17581805 ~ 17582118 (-) True G1908789
TU2183014 lncRNA downstream 42191 17572846 ~ 17573066 (-) True G1908777
TU2182944 lncRNA downstream 83499 17524456 ~ 17531758 (-) False G1908714
TU2183048 lncRNA upstream 432 17615927 ~ 17616140 (-) True G1908804
TU2183055 lncRNA upstream 10441 17625936 ~ 17626204 (-) True G1908811
TU2183056 lncRNA upstream 12434 17627929 ~ 17628129 (-) True G1908812
TU2183076 lncRNA upstream 75586 17691081 ~ 17691428 (-) True G1908831
TU2183077 lncRNA upstream 76066 17691561 ~ 17692283 (-) True G1908832
XM_021582511.2 mRNA downstream 65764 17533121 ~ 17549493 (-) True LOC110503892
XM_021582513.2 mRNA downstream 65765 17533121 ~ 17549492 (-) False LOC110503892
XM_021582508.2 mRNA downstream 285834 17325594 ~ 17329423 (-) True LOC110503890
XM_021582507.2 mRNA downstream 286135 17325594 ~ 17329122 (-) False LOC110503890
XM_021581796.2 mRNA downstream 333732 17279898 ~ 17281525 (-) True LOC110503457
XM_021582520.2 mRNA upstream 24883 17640378 ~ 17658084 (-) False LOC110503896
XM_021582518.2 mRNA upstream 24883 17640378 ~ 17658101 (-) False LOC110503896
XM_021582519.2 mRNA upstream 24883 17640378 ~ 17658271 (-) False LOC110503896
XM_021582522.2 mRNA upstream 24883 17640378 ~ 17658271 (-) True LOC110503896
XM_021582517.2 mRNA upstream 42963 17658458 ~ 17671274 (-) True itgae.2
TU2182802 other downstream 336847 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 1454031 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 1482695 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 1570952 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 2102164 15512359 ~ 15513093 (-) True G1906218
TU2183897 other upstream 816529 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 816529 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 1352567 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 1352567 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 1544954 19160449 ~ 19162158 (-) True G1910398

Expression Profile