RNA id: TU2183267


Basic Information

Item Value
RNA id TU2183267
length 2276
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id G1908999
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17937713 ~ 17948050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGAAATTAAACTGATCACAAAAATGGCAACTAATGTAAAGAATGATTAAGTATGGTCCAAAGTGATGGGCATGTTTCAATACATGAATGGACATATAATGAACATGCCTTTTTTTATATGGTTACAGCTCACATGGAGGCTGTGCATGCAGCATGTACCCCTGACACCTGTGCAGGAAGTCACACACTTCAGTATAGGGAAACTTAACtcctggagtgttttttttttagataaagaGACTGTGTGTCATGCCAAATCCCCTGCCATAACACATATGACTAGTATGACAGCCCCTTGAGATAAATGGCTCTTTAGTACTCAATCACAGGATAAACATACCTATTTGCACCTCTTCCTGCTGAGGAGTGCATGACAGAGACATAAGGACTTCATCTGTACACCTCTTATCAAAAGTGGGCACACCTTTACATGCATTGTGTTCCCTGACTGTTGACAGAAAAAAAGAATGGGACAAATGGCATGATGTTTCATTGTGGTCATTGGCAAGTGGTATTAGATCATTCTACAGAAGGAAGTTGGTGTCAAATACATTATGACATGTCTGTCTGAAGCAAGCCTAACATAGCCTCTGTATGAAGAacaatgaagaagaaaaaactgACCTGAGGCACAATAGATGATACAGTCAGACACAAGGTGCCATCTAGTGGTATATTTACAAAGAAACAGGGACATTGAACATAAGGCCAATGACTATTTGTCTGTCAATTTTGAATAAACAAACACTGATAATCAAAGTAAACACAAACCTTAGAGCAATTTACCACACCACAAATATTTATTAAAAACAACATTGTTCTCAGACACATTTTCCACCAACTTCAAGTACAAAATCTCTTACCTAAACAAGTCACAGGGGCGCTTTGATACGTTTGACCTGTCCCATCCTAATTAAGGTCACAGGGGAAACACTGACCAAAACTAAGGTTCCTACCCTGCCACAATAATACAAGTGTTATTCCAGTTAGTTTTTTGTTACAAAAGCATGTGGATGGTGTCAGAGAGACATACTTGAATAGCCTACTGGGCGGTGACATGAGGGAATATCAATATGAACTATTGAACAAATAGGTGGTCATATTGTTGGAAATGATGTGGTATACTTCAGCATTTCAGAAATACCAATTTAAAAAAGTCTGACCGAAAACAAAAACaggtggatttttttttattcaagtGTTTACATTATGATATTATATTACTTTCATGTCAGCTAAGATGATTCAGAATAAGCTGCACATTTGAGCTCCTCACAATGCAGACTTTGTGTCGACGTAACTTGTTTTTCCCTCTTAAATCCTAAAAGCTATTCTGACACATGTTCCAGAAGTCCATTTGACATCTAGATGTGATATCACTCACTTCAATTTGTAaaacagtaaaaaatatatatattaaaaataaagccTTTAGTCCTACTCTTTCTTTTGAAACGGCCCAAGATGAAAGATTGCTTGCACTATAGGACATTAATAACACCTGCGTACAAGAGCCAGCACATCATGCTAGAGAGAGCCATCCAGAGAAAAAACAAGAATGTTCATTTGCTACCTTTAATTATCTTCAACATCAACTGTATGAAAGCATGCAAAAATGACTTCTTTAGAATGGTACATATTTACATTGTAACAACCACATTTCAGCTCAATACATAGGTGTAATATTTGGAAAACACAGAGCTAATAGTACAAAAGGCATTCAGACCATTATgagtaatatagtacagtacatcaTGAACAGACAATGAAACCCTCTGTTAACAGCAGACACAAACATCACGCAGATGGAATAAGACAAAAGTTAAAAACCTAATACATGGTTTGTACTGTAGTTATCACAAATCTTTCTAAAAGACTGTAAGGGTGAGCTCTTTCATTTGGATCTCTCTTCAAATATATTACAttaatattacatattatatgaaGATACAGCAAAGAGTTTGCTTTGAACAGGTCTGTCCCCTAATTTAAACAGGTCTATCAGAAAAAAGGGTTTACCAGCAGCCCTCTGCAAGTGCACCATCATCTTCAGTAAGGTCCTCCAACTCTCCTTCTCCGTTTCCATCCAATTCTCCTTCTCTGCTTGATTTCCTCAATGAAGGATGAACCTCGGTTTCCAGTCGCCCCCAAGAGTCCGCAAGGAGACCTCCTGGAGCAGACATAGACCTCTCTGCCCTCCTGTTGTGACACTCAAAGGGGTTACTAAAAGACCTCTTCCTCAGCATGGACTTCACCAGGATCTAACGTGGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2183262 lncRNA downstream 3132 17933975 ~ 17934581 (-) True G1908996
TU2183191 lncRNA downstream 83607 17847931 ~ 17854106 (-) True G1908932
TU2183188 lncRNA downstream 93597 17837139 ~ 17844116 (-) True G1908929
TU2183122 lncRNA downstream 160853 17771194 ~ 17776860 (-) True G1908874
TU2183094 lncRNA downstream 205364 17732132 ~ 17732349 (-) True G1908849
TU2183239 lncRNA upstream 15210 17963260 ~ 18015869 (-) True LOC110503905
TU2183294 lncRNA upstream 53183 18001233 ~ 18007350 (-) True G1909024
TU2183663 lncRNA upstream 103804 18051854 ~ 18052194 (-) True G1909345
TU2183677 lncRNA upstream 137997 18086047 ~ 18086265 (-) True G1909357
TU2183731 lncRNA upstream 217821 18165871 ~ 18166177 (-) True G1909407
XM_021581798.2 mRNA downstream 10779 17923724 ~ 17926934 (-) True LOC110503460
XM_036962085.1 mRNA downstream 78317 17855290 ~ 17859396 (-) False wu:fc27b11
XM_036962086.1 mRNA downstream 78344 17858253 ~ 17859369 (-) True wu:fc27b11
XM_036961082.1 mRNA downstream 87284 17849473 ~ 17850429 (-) True LOC118944000
XM_036961081.1 mRNA downstream 94049 17842708 ~ 17843664 (-) True LOC118943999
XM_021582536.2 mRNA upstream 15208 17963258 ~ 17973190 (-) False LOC110503905
NM_001124487.1 mRNA upstream 41179 17989229 ~ 17999347 (-) False ca4
XM_021581481.2 mRNA upstream 41179 17989229 ~ 17999541 (-) False ca4
XM_021581482.2 mRNA upstream 41179 17989229 ~ 17999629 (-) True ca4
XM_021582539.2 mRNA upstream 89538 18037588 ~ 18042701 (-) True LOC110503907
TU2182802 other downstream 659303 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 1776487 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 1805151 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 1893408 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 2424620 15512359 ~ 15513093 (-) True G1906218
TU2183897 other upstream 483974 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 483974 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 1020012 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 1020012 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 1212399 19160449 ~ 19162158 (-) True G1910398

Expression Profile