RNA id: TU2184311



Basic Information


Item Value
RNA id TU2184311
length 309
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1909915
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18766454 ~ 18766762 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggttaactttgttaaagcaaggcccctgaacaaTCGTGTATTTtatgcattatgcaatgatatgggctgaccacttgcatgatgaGGAGTTTCTCACACgtctggcctatctgggtgatgtcttttctcacctgaatgatctgaatctagaatTACAGGgactctgcaactatattcaatgtggaGGACAAAagtgaggctatgattaagaagttgaagctcttctctgtctgcattaacaaggaaaacacacaggtctttccatcatcgtatgattttttgtgtgcaaatgagctcaagcttacggac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2184310 lncRNA downstream 7 18766216 ~ 18766447 (-) True G1909914
TU2184305 lncRNA downstream 10968 18754988 ~ 18755486 (-) True G1909911
TU2184296 lncRNA downstream 26172 18740065 ~ 18740282 (-) True G1909902
TU2184258 lncRNA downstream 89061 18675677 ~ 18677393 (-) True G1909869
TU2184257 lncRNA downstream 91776 18674079 ~ 18674678 (-) True G1909868
TU2184231 lncRNA upstream 6840 18773602 ~ 18775173 (-) True G1909845
TU2184320 lncRNA upstream 44309 18811071 ~ 18811495 (-) True G1909924
TU2184325 lncRNA upstream 47939 18814701 ~ 18815028 (-) True G1909927
TU2184329 lncRNA upstream 52491 18819253 ~ 18825843 (-) True G1909930
TU2184359 lncRNA upstream 107961 18874723 ~ 18874925 (-) True G1909960
XM_036961084.1 mRNA downstream 1758 18757346 ~ 18764696 (-) True slc47a3
XM_021582593.2 mRNA downstream 200323 18561930 ~ 18566131 (-) False LOC110503933
XR_005039333.1 mRNA downstream 201994 18561930 ~ 18564460 (-) False LOC110503933
XM_021582587.2 mRNA downstream 205090 18504076 ~ 18561364 (-) False LOC110503929
XM_021582599.2 mRNA upstream 8494 18775256 ~ 18787910 (-) False slc13a5b
XM_036962081.1 mRNA upstream 9153 18775915 ~ 18787927 (-) True slc13a5b
XM_021582606.2 mRNA upstream 22457 18789219 ~ 18794812 (-) True LOC110503941
XM_021582601.2 mRNA upstream 28492 18795254 ~ 18813746 (-) False wdr81
XM_021582600.2 mRNA upstream 28492 18795254 ~ 18813800 (-) True wdr81
TU2183897 other downstream 331662 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other downstream 331662 18432024 ~ 18434792 (-) True LOC110503924
TU2182802 other downstream 1488044 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 2605228 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 2633892 16131990 ~ 16132562 (-) True G1907922
TU2184703 other upstream 201300 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 201300 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 393687 19160449 ~ 19162158 (-) True G1910398
TU2185002 other upstream 566079 19332841 ~ 19333225 (-) True G1910539
TU2185117 other upstream 723955 19490717 ~ 19491608 (-) True G1910651

Expression Profile