RNA id: TU2184956



Basic Information


Item Value
RNA id TU2184956
length 781
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1910495
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 19286273 ~ 19289313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGTACTGTACATCATACTGAACATACAGCccatcatactgtacatacagcccatcatactgtacatacagcccatcacactgtacatacagcccATCATAACGTACATACAGCCCATCATACTGTACCACACAGCCCATCATACTGCccatcatactgtacatacagcccatcatactgtacatacagcccatcattcagtacatacagcccatcacactgtacatactgtacatactgcccATCATAATGTAGATACAGCCCATCatacagaccatcaaactgtacatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaggaTATAAAACtggaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctctagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2184907 lncRNA downstream 58881 19228756 ~ 19229240 (-) True G1910449
TU2184859 lncRNA downstream 121711 19166167 ~ 19166410 (-) True G1910403
TU2184858 lncRNA downstream 122833 19165080 ~ 19165288 (-) True G1910402
TU2184850 lncRNA downstream 128439 19159477 ~ 19159682 (-) True G1910397
TU2184849 lncRNA downstream 129085 19158741 ~ 19159036 (-) True G1910396
TU2184976 lncRNA upstream 23835 19313148 ~ 19313613 (-) True G1910513
TU2184978 lncRNA upstream 25055 19314368 ~ 19314605 (-) True G1910515
TU2184996 lncRNA upstream 39133 19328446 ~ 19328780 (-) True G1910533
TU2185008 lncRNA upstream 48175 19337488 ~ 19337923 (-) True G1910545
TU2185026 lncRNA upstream 68375 19357688 ~ 19358074 (-) True G1910563
XM_021582607.2 mRNA downstream 102349 18971681 ~ 19185772 (-) False LOC110503944
XM_021582600.2 mRNA downstream 474321 18795254 ~ 18813800 (-) True wdr81
XM_021582601.2 mRNA downstream 474375 18795254 ~ 18813746 (-) False wdr81
XM_021582606.2 mRNA downstream 493309 18789219 ~ 18794812 (-) True LOC110503941
XM_036962081.1 mRNA downstream 500194 18775915 ~ 18787927 (-) True slc13a5b
XR_005039347.1 mRNA upstream 108041 19397354 ~ 19398144 (-) False LOC118944057
XR_005039330.1 mRNA upstream 209249 19498562 ~ 19501080 (-) False LOC118944022
XM_021582610.2 mRNA upstream 216865 19506178 ~ 19515249 (-) False LOC110503947
XM_021582612.2 mRNA upstream 216865 19506178 ~ 19515249 (-) False LOC110503947
XM_021582611.2 mRNA upstream 216865 19506178 ~ 19517866 (-) False LOC110503947
TU2184852 other downstream 125963 19160449 ~ 19162158 (-) True G1910398
TU2184703 other downstream 314891 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other downstream 314891 18968062 ~ 18973230 (-) True LOC110503944
TU2183897 other downstream 853329 18432024 ~ 18434792 (-) False LOC110503924
TU2185002 other upstream 43528 19332841 ~ 19333225 (-) True G1910539
TU2185117 other upstream 201404 19490717 ~ 19491608 (-) True G1910651
TU2185535 other upstream 401753 19691066 ~ 19691513 (-) True G1910996
TU2186472 other upstream 1171355 20460668 ~ 20461437 (-) True G1911862
TU2187184 other upstream 1683366 20972679 ~ 20976236 (-) True G1912470

Expression Profile